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Bug 580176 - sci-biology/picard-2.19.2 version bump
Summary: sci-biology/picard-2.19.2 version bump
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Biology related packages
URL: http://broadinstitute.github.io/picard/
Whiteboard:
Keywords: PMASKED
Depends on:
Blocks:
 
Reported: 2016-04-16 05:43 UTC by Johann Schmitz (ercpe) (RETIRED)
Modified: 2022-01-08 10:32 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments

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Description Johann Schmitz (ercpe) (RETIRED) gentoo-dev 2016-04-16 05:43:15 UTC
On 11.04.2016 15:39, Martin Mokrejs wrote:
> Hi Johan,
>   I see there is much never picard available:
> 
> http://broadinstitute.github.io/picard/index.html
> https://github.com/broadinstitute/picard/releases/tag/2.2.1
> 
>   Seems the ebuild will need a bit tweaking to adjust new numbering style.
> 
> Martin


Reproducible: Always
Comment 1 Martin Mokrejš 2020-10-18 11:04:44 UTC
2.23.8 is available now but either somebody manages to crack at the gradle build process from @java herd or we are stuck with the last version which used Apache ant to build.
Comment 2 Larry the Git Cow gentoo-dev 2021-12-06 11:41:01 UTC
The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1aa6122f56334850d1168c1da91af91af58175b3

commit 1aa6122f56334850d1168c1da91af91af58175b3
Author:     David Seifert <soap@gentoo.org>
AuthorDate: 2021-12-06 11:40:53 +0000
Commit:     David Seifert <soap@gentoo.org>
CommitDate: 2021-12-06 11:40:53 +0000

    profiles: last-rite sci-biology/picard
    
    Bug: https://bugs.gentoo.org/572142
    Bug: https://bugs.gentoo.org/580176
    Bug: https://bugs.gentoo.org/776298
    Signed-off-by: David Seifert <soap@gentoo.org>

 profiles/package.mask | 6 ++++++
 1 file changed, 6 insertions(+)
Comment 3 Larry the Git Cow gentoo-dev 2022-01-08 10:32:51 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=8c4dc835b136a9585d825da398339774c16b7c43

commit 8c4dc835b136a9585d825da398339774c16b7c43
Author:     Jakov Smolić <jsmolic@gentoo.org>
AuthorDate: 2022-01-08 10:28:27 +0000
Commit:     Jakov Smolić <jsmolic@gentoo.org>
CommitDate: 2022-01-08 10:32:29 +0000

    sci-biology/picard: treeclean
    
    Closes: https://bugs.gentoo.org/776298
    Closes: https://bugs.gentoo.org/580176
    Closes: https://bugs.gentoo.org/572142
    Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>

 profiles/package.mask                       |   6 --
 sci-biology/picard/Manifest                 |   1 -
 sci-biology/picard/files/1.103-gentoo.patch | 131 ----------------------------
 sci-biology/picard/metadata.xml             |  11 ---
 sci-biology/picard/picard-1.103.ebuild      |  69 ---------------
 5 files changed, 218 deletions(-)