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Bug 719976 - sci-libs/mkl-10.0.5.025 doesn't register to BLAS or LAPACK
Summary: sci-libs/mkl-10.0.5.025 doesn't register to BLAS or LAPACK
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2020-04-29 05:18 UTC by jorge
Modified: 2020-11-09 07:38 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge --info mkl (bug_mkl,6.01 KB, text/plain)
2020-04-29 05:18 UTC, jorge
Details

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Description jorge 2020-04-29 05:18:50 UTC
Created attachment 635124 [details]
emerge --info mkl

emerging successful:
-------------------------------------------------------------------------
emerge --ask mkl

These are the packages that would be merged, in order:

Calculating dependencies... done!
[ebuild  N     ] app-eselect/eselect-blas-0.2 
[ebuild  N     ] app-eselect/eselect-cblas-0.1 
[ebuild  N     ] app-eselect/eselect-lapack-0.2 
[ebuild  N     ] virtual/fortran-0  USE="openmp" 
[ebuild  N     ] sci-libs/mkl-10.0.5.025  USE="fftw fortran95 int64 -doc -mpi" 

Would you like to merge these packages? [Yes/No] y
>>> Verifying ebuild manifests
>>> Running pre-merge checks for sci-libs/mkl-10.0.5.025
 * Checking for at least 3500 MiB disk space at "/var/tmp/portage/sci-libs/mkl-10.0.5.025/temp" ...                            [ ok ]
>>> Emerging (1 of 5) app-eselect/eselect-blas-0.2::gentoo
>>> Emerging (2 of 5) app-eselect/eselect-cblas-0.1::gentoo
>>> Emerging (3 of 5) app-eselect/eselect-lapack-0.2::gentoo
>>> Emerging (4 of 5) virtual/fortran-0::gentoo
>>> Installing (1 of 5) app-eselect/eselect-blas-0.2::gentoo
>>> Installing (2 of 5) app-eselect/eselect-cblas-0.1::gentoo
>>> Installing (3 of 5) app-eselect/eselect-lapack-0.2::gentoo
>>> Installing (4 of 5) virtual/fortran-0::gentoo
>>> Emerging (5 of 5) sci-libs/mkl-10.0.5.025::gentoo
>>> Installing (5 of 5) sci-libs/mkl-10.0.5.025::gentoo
>>> Recording sci-libs/mkl in "world" favorites file...
>>> Jobs: 5 of 5 complete                           Load avg: 1.69, 0.91, 0.52

 * Messages for package sci-libs/mkl-10.0.5.025:

 * Current eselected blas is 
 * To use one of mkl profiles, issue (as root):
 * 	 eselect blas set <profile>
 * cblas has been eselected to mkl-gfortran-threads-int64
 * cblas is now set to mkl-gfortran-threads-int64 for consistency
 * lapack has been eselected to mkl-gfortran-threads-int64
 * lapack is now set to mkl-gfortran-threads-int64 for consistency
>>> Auto-cleaning packages...

>>> No outdated packages were found on your system.

 * GNU info directory index is up-to-date.
-----------------------------------------------------------------------------

but none BLAS found:

-----------------------------------------------------------------------------
localhost /home/jorge # eselect blas list
Available BLAS/CBLAS (lib) candidates:
  (none found)
Available BLAS/CBLAS (lib64) candidates:
  (none found)
-----------------------------------------------------------------------------

the CBLAS was registered:

-----------------------------------------------------------------------------
localhost /home/jorge # eselect cblas list
Installed CBLAS for library directory lib64
  [1]   mkl-gfortran
  [2]   mkl-gfortran-int64
  [3]   mkl-gfortran-threads
  [4]   mkl-gfortran-threads-int64 *
-----------------------------------------------------------------------------

but LAPACK was not:

-----------------------------------------------------------------------------
localhost /home/jorge # eselect lapack list
Available LAPACK (lib) candidates:
  (none found)
Available LAPACK (lib64) candidates:
  (none found)
-----------------------------------------------------------------------------

on attachment:

emerge --info mkl 



sci-libs/mkl-10.0.5.025::gentoo was built with the following:
USE="fftw fortran95 int64 -doc -mpi" ABI_X86="(64)"
Comment 1 jorge 2020-04-30 21:30:33 UTC
In the wiki page https://wiki.gentoo.org/wiki/Blas-lapack-switch I confused the runtime mkl sci-libs/mkl-rt by the compiletime sci-libs/mkl. As I was reporting to the compiletime sci-libs/mkl I think the bug can safely be dropped because the wiki does not explicitly mention support for this sci-libs/mkl, only for runtime flavor. Unless you otherwise see fit to maintain.

Sorry for the misunderstanding.
Comment 2 Benda Xu gentoo-dev 2020-04-30 23:48:03 UTC
(In reply to jorge from comment #1)
> In the wiki page https://wiki.gentoo.org/wiki/Blas-lapack-switch I confused
> the runtime mkl sci-libs/mkl-rt by the compiletime sci-libs/mkl. As I was
> reporting to the compiletime sci-libs/mkl I think the bug can safely be
> dropped because the wiki does not explicitly mention support for this
> sci-libs/mkl, only for runtime flavor. Unless you otherwise see fit to
> maintain.
> 
> Sorry for the misunderstanding.

Thanks.  The package names of mkl are misleading.  We need to sort it through.
Comment 3 Benda Xu gentoo-dev 2020-05-12 12:36:56 UTC
Hi Mo, mkl vs mkl-rt is causing confusion.

As we discussed last time, mkl-rt should be merged into mkl controlled by a USE flag.  I am not a MKL user.  Could you please to fix this?
Comment 4 Larry the Git Cow gentoo-dev 2020-11-09 07:38:26 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=56846e03ed7c84387775b9ef6b99f8fdf65add10

commit 56846e03ed7c84387775b9ef6b99f8fdf65add10
Author:     Aisha Tammy <gentoo@aisha.cc>
AuthorDate: 2020-11-05 13:47:11 +0000
Commit:     Benda Xu <heroxbd@gentoo.org>
CommitDate: 2020-11-09 07:38:13 +0000

    sci-libs/mkl: version bump to 2020.4.304
    
    Use eselect-ldso mechanism.
    Respect Prefix.
    
    Closes: https://bugs.gentoo.org/587338
    Closes: https://bugs.gentoo.org/592662
    Closes: https://bugs.gentoo.org/747304
    Closes: https://bugs.gentoo.org/260810
    Closes: https://bugs.gentoo.org/715548
    Closes: https://bugs.gentoo.org/719976
    
    Reported-by: Juergen Rose, François Bissey, Florian D., Martin Mokrejš
    Reported-by: Michel Lang, juantxorena@gmail.com, Chris Larson, jorge
    
    Package-Manager: Portage-3.0.8, Repoman-3.0.1
    Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
    Signed-off-by: Benda Xu <heroxbd@gentoo.org>

 sci-libs/mkl/Manifest              |   1 +
 sci-libs/mkl/mkl-2020.4.304.ebuild | 230 +++++++++++++++++++++++++++++++++++++
 2 files changed, 231 insertions(+)