Default prefix update pulls in libpam, that fails to install. Package it's relevant uses either have to be masked in profiles or library need a fix for installation paths. """ $ emerge -avuDN @world These are the packages that would be merged, in order: Calculating dependencies... done! [ebuild N ] sys-libs/pam-1.3.1_p20200128::gentoo USE="berkdb cracklib filecaps nls pie (split-usr) -audit -debug -nis (-selinux) -static-libs" 0 KiB [ebuild N ] sys-auth/pambase-20191128::gentoo USE="cracklib nullok sha512 -caps -consolekit -debug -elogind -minimal -mktemp -pam_krb5 -pam_ssh -passwdqc -securetty (-selinux) (-systemd)" 0 KiB [ebuild U ] sys-libs/libcap-2.31::gentoo [2.27::gentoo] USE="pam* (split-usr%*) -static-libs" 0 KiB Total: 3 packages (1 upgrade, 2 new), Size of downloads: 0 KiB Would you like to merge these packages? [Yes/No] * QA Notice: the following files are outside of the prefix: * /usr * /usr/lib64 * /usr/lib64/libpam_misc.so * /usr/lib64/libpamc.la * /usr/lib64/libpamc.so * /usr/lib64/libpam.la * /usr/lib64/libpam_misc.so.0.82.1 * /usr/lib64/libpam_misc.so.0 * /usr/lib64/libpamc.so.0.82.1 * /usr/lib64/libpamc.so.0 * /usr/lib64/libpam.so.0.84.2 * /usr/lib64/libpam_misc.la * /usr/lib64/libpam.so * /usr/lib64/libpam.so.0 * ERROR: sys-libs/pam-1.3.1_p20200128::gentoo failed: * Aborting due to QA concerns: there are files installed outside the prefix * * Call stack: * misc-functions.sh, line 586: Called install_qa_check * misc-functions.sh, line 132: Called source 'install_symlink_html_docs' * 05prefix, line 114: Called install_qa_check_prefix * 05prefix, line 27: Called die * The specific snippet of code: * die "Aborting due to QA concerns: there are files installed outside the prefix" """
Created attachment 614096 [details] sys-libs:pam-1.3.1_p20200128.log
$ emerge --info Portage 2.3.89 (python 3.6.10-final-0, default/linux/amd64/17.0/no-multilib/prefix/kernel-3.2+, gcc-10.0.1, glibc-2.31-r1, 5.2.17-1rodete3-amd64 x86_64) ================================================================= System uname: Linux-5.2.17-1rodete3-amd64-x86_64-Intel-R-_Core-TM-_i7-6600U_CPU_@_2.60GHz-with-debian-bullseye-sid KiB Mem: 16345180 total, 1775328 free KiB Swap: 16629756 total, 16532732 free Head commit of repository gentoo: 4202315a5c0a34f3ce0be67ef3216efbae1c6532 Head commit of repository haskell: 0b0d158ce1e52484d1c857b0c64f9326ce9b774f sh bash 5.0_p16 ld GNU ld (Gentoo 2.34 p1) 2.34.0 ccache version 3.7.7 [enabled] app-shells/bash: 5.0_p16::gentoo dev-lang/perl: 5.30.1::gentoo dev-lang/python: 2.7.17-r1::gentoo, 3.6.10::gentoo, 3.7.6::gentoo, 3.8.1::gentoo dev-util/ccache: 3.7.7-r1::gentoo dev-util/cmake: 3.16.4::gentoo dev-util/pkgconfig: 0.29.2::gentoo sys-apps/baselayout: 2.7::gentoo sys-apps/sandbox: 2.18::gentoo sys-devel/autoconf: 2.69-r5::gentoo sys-devel/automake: 1.16.1-r2::gentoo sys-devel/binutils: 2.34::gentoo sys-devel/gcc: 10.0.1_pre9999::gentoo sys-devel/gcc-config: 2.2.1::gentoo sys-devel/libtool: 2.4.6-r6::gentoo sys-devel/make: 4.3::gentoo sys-kernel/linux-headers: 5.5::gentoo (virtual/os-headers) sys-libs/glibc: 2.31-r1::gentoo Repositories: gentoo location: /home/siarheit/dev/gentoo sync-type: git sync-uri: https://github.com/gentoo/gentoo priority: -1000 crossdev location: /home/siarheit/co masters: gentoo haskell location: /home/siarheit/dev/gentoo-haskell sync-type: git sync-uri: https://github.com/gentoo-haskell/gentoo-haskell masters: gentoo ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="@FREE" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /home/siarheit/gentoo/rap/etc /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /home/siarheit/gentoo/rap/etc/env.d /home/siarheit/gentoo/rap/etc/gentoo-release" CXXFLAGS="-O2 -pipe -O2 -pipe" DISTDIR="/home/siarheit/dev/distfiles" ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs ccache config-protect-if-modified distlocks ebuild-locks fail-clean fixlafiles force-prefix ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sfperms sign strict unknown-features-warn unmerge-logs unmerge-orphans unprivileged" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://distfiles.gentoo.org" LANG="ru_RU.UTF-8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j4" PKGDIR="/home/siarheit/gentoo/rap/var/cache/binpkgs" PORTAGE_CONFIGROOT="/home/siarheit/gentoo/rap/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/home/siarheit/gentoo/rap/var/tmp" USE="X acl alsa amd64 apng berkdb bzip2 cli crypt curl cxx dbus dri fluidsynth fortran gdbm gif gtk iconv ipv6 jpeg libtirpc midi ncurses nls nptl opengl openmp pam pcre png prefix pulseaudio python readline seccomp split-usr sqlite ssl tcpd tiff unicode vorbis zlib" ABI_X86="64" ADA_TARGET="gnat_2018" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-2" POSTGRES_TARGETS="postgres10 postgres11" PYTHON_SINGLE_TARGET="python3_6" PYTHON_TARGETS="python2_7 python3_6" QEMU_USER_TARGETS="hppa arm64" RUBY_TARGETS="ruby24 ruby25" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
well, honestly I have no idea why suddenly prefix needs pam at all. Does --prefix="${EPREFIX}"/usr help?
Probably default/linux/amd64/17.0/no-multilib/prefix/kernel-3.2+ somehow by accident does not include features/prefix/rpath/use.mask:pam. prefix@ might know the details. $ EXTRA_ECONF=--prefix="$(portageq envvar EPREFIX)"/usr ebuild ~/dev/gentoo/sys-libs/pam/pam-1.3.1_p20200128.ebuild clean install does not work: * QA Notice: the following files are outside of the prefix: * /usr * /usr/lib64 * /usr/lib64/libpam_misc.so * /usr/lib64/libpamc.la * /usr/lib64/libpamc.so * /usr/lib64/libpam.la * /usr/lib64/libpam_misc.so.0.82.1 * /usr/lib64/libpam_misc.so.0 * /usr/lib64/libpamc.so.0.82.1 * /usr/lib64/libpamc.so.0 * /usr/lib64/libpam.so.0.84.2 * /usr/lib64/libpam_misc.la * /usr/lib64/libpam.so * /usr/lib64/libpam.so.0
(In reply to Sergei Trofimovich from comment #4) > Probably default/linux/amd64/17.0/no-multilib/prefix/kernel-3.2+ somehow by > accident does not include features/prefix/rpath/use.mask:pam. prefix@ might > know the details. > > $ EXTRA_ECONF=--prefix="$(portageq envvar EPREFIX)"/usr ebuild > ~/dev/gentoo/sys-libs/pam/pam-1.3.1_p20200128.ebuild clean install > > does not work: > > * QA Notice: the following files are outside of the prefix: > * /usr > * /usr/lib64 > * /usr/lib64/libpam_misc.so > * /usr/lib64/libpamc.la > * /usr/lib64/libpamc.so > * /usr/lib64/libpam.la > * /usr/lib64/libpam_misc.so.0.82.1 > * /usr/lib64/libpam_misc.so.0 > * /usr/lib64/libpamc.so.0.82.1 > * /usr/lib64/libpamc.so.0 > * /usr/lib64/libpam.so.0.84.2 > * /usr/lib64/libpam_misc.la > * /usr/lib64/libpam.so > * /usr/lib64/libpam.so.0 pam was unmasked on purpose before. But now after rethinking, it should be masked in Prefix with its reverse dependencies.
(In reply to Benda Xu from comment #5) > (In reply to Sergei Trofimovich from comment #4) > > Probably default/linux/amd64/17.0/no-multilib/prefix/kernel-3.2+ somehow by > > accident does not include features/prefix/rpath/use.mask:pam. prefix@ might > > know the details. > > > > $ EXTRA_ECONF=--prefix="$(portageq envvar EPREFIX)"/usr ebuild > > ~/dev/gentoo/sys-libs/pam/pam-1.3.1_p20200128.ebuild clean install > > > > does not work: > > > > * QA Notice: the following files are outside of the prefix: > > * /usr > > * /usr/lib64 > > * /usr/lib64/libpam_misc.so > > * /usr/lib64/libpamc.la > > * /usr/lib64/libpamc.so > > * /usr/lib64/libpam.la > > * /usr/lib64/libpam_misc.so.0.82.1 > > * /usr/lib64/libpam_misc.so.0 > > * /usr/lib64/libpamc.so.0.82.1 > > * /usr/lib64/libpamc.so.0 > > * /usr/lib64/libpam.so.0.84.2 > > * /usr/lib64/libpam_misc.la > > * /usr/lib64/libpam.so > > * /usr/lib64/libpam.so.0 > > pam was unmasked on purpose before. But now after rethinking, it should be > masked in Prefix with its reverse dependencies. FTR: I talked to haubi about it at fosdem and he also had no clue why pam is availible on prefix platforms:D Would be nice to maske it there, yes.
(In reply to Benda Xu from comment #5) > (In reply to Sergei Trofimovich from comment #4) > > Probably default/linux/amd64/17.0/no-multilib/prefix/kernel-3.2+ somehow by > > accident does not include features/prefix/rpath/use.mask:pam. prefix@ might > > know the details. > > > > $ EXTRA_ECONF=--prefix="$(portageq envvar EPREFIX)"/usr ebuild > > ~/dev/gentoo/sys-libs/pam/pam-1.3.1_p20200128.ebuild clean install > > > > does not work: > > > > * QA Notice: the following files are outside of the prefix: > > * /usr > > * /usr/lib64 > > * /usr/lib64/libpam_misc.so > > * /usr/lib64/libpamc.la > > * /usr/lib64/libpamc.so > > * /usr/lib64/libpam.la > > * /usr/lib64/libpam_misc.so.0.82.1 > > * /usr/lib64/libpam_misc.so.0 > > * /usr/lib64/libpamc.so.0.82.1 > > * /usr/lib64/libpamc.so.0 > > * /usr/lib64/libpam.so.0.84.2 > > * /usr/lib64/libpam_misc.la > > * /usr/lib64/libpam.so > > * /usr/lib64/libpam.so.0 > > pam was unmasked on purpose before. But now after rethinking, it should be > masked in Prefix with its reverse dependencies. I remembered now. The reverse dependency is way too big to be handled in the profile, for example, sys-libs/pam <- gnome-base/gdm <- gnome-base/gnome draws in too many packages to be masked. It is easier to just let pam install successfully on Prefix.
(In reply to Benda Xu from comment #7) > I remembered now. The reverse dependency is way too big to be handled in > the profile, for example, sys-libs/pam <- gnome-base/gdm <- gnome-base/gnome > draws in too many packages to be masked. > > It is easier to just let pam install successfully on Prefix. Hi Mikle and Sergei, what do you think?
(In reply to Benda Xu from comment #8) > (In reply to Benda Xu from comment #7) > > > I remembered now. The reverse dependency is way too big to be handled in > > the profile, for example, sys-libs/pam <- gnome-base/gdm <- gnome-base/gnome > > draws in too many packages to be masked. > > > > It is easier to just let pam install successfully on Prefix. > > Hi Mikle and Sergei, what do you think? Hello. As for me I do not currently have any prefix installation around, so I can't test solutions even in theory, that said I am more than happy to accept any help with this, otherwise the bug may take long as I will have to deploy ubuntu prefix myself (not soon, workload high).
Created attachment 617440 [details, diff] pam.patch Hi Mikle, what do you think of this patch?
Created attachment 617442 [details, diff] pam.patch Mention bug 695966, this patch finally fix it.
Created attachment 617444 [details, diff] pam.patch bug 699526 is also fixed by this patch with the --exec-prefix argument.
(In reply to Benda Xu from comment #12) > Created attachment 617444 [details, diff] [details, diff] > pam.patch > > bug 699526 is also fixed by this patch with the --exec-prefix argument. It looks pretty good and without having ugly hacks, I will also test it on non-prefix systems and then commit, Thank you a lot!
Thank you Mikle.
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e4fee95b96c9d684c3b992f7e154c9d12e6636ab commit e4fee95b96c9d684c3b992f7e154c9d12e6636ab Author: Mikle Kolyada <zlogene@gentoo.org> AuthorDate: 2020-03-12 16:07:51 +0000 Commit: Mikle Kolyada <zlogene@gentoo.org> CommitDate: 2020-03-12 16:12:16 +0000 sys-libs/pam: Add prefix support Closes: https://bugs.gentoo.org/709924 Closes: https://bugs.gentoo.org/699188 Closes: https://bugs.gentoo.org/699526 Bug: https://bugs.gentoo.org/695966 Thanks-to: Benda Xu <heroxbd@gentoo.org> Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Mikle Kolyada <zlogene@gentoo.org> sys-libs/pam/pam-1.3.1_p20200128.ebuild | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-)
