x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/plplot -I/usr/include/emboss -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -fno-common -O2 -c -o disc.o disc.c x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/plplot -I/usr/include/emboss -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -fno-common -O2 -c -o phylip.o phylip.c /bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -Wl,-O1 -Wl,--as-needed -o fclique clique.o disc.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lm libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -O2 -Wl,-O1 -o fclique clique.o disc.o phylip.o -Wl,--as-needed -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lm /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: disc.o:(.bss+0x38): multiple definition of `phylostates'; clique.o:(.bss+0x4a0): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: phylip.o:(.bss+0x50): multiple definition of `embossouttree'; clique.o:(.bss+0xf8): first defined here ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.1_no-multilib-20200124-204141 ------------------------------------------------------------------- Please see the tracker bug for details. gcc-config -l: [1] x86_64-pc-linux-gnu-9.2.0 * llvm: 9.0.1 Available Python interpreters, in order of preference: [1] python3.7 [2] python3.6 [3] python2.7 (fallback) Available Ruby profiles: [1] ruby24 (with Rubygems) [2] ruby25 (with Rubygems) * Available Rust versions: [1] rust-1.40.0 * repository: ==> /var/db/repos/gentoo/metadata/timestamp.chk <== Sun, 26 Jan 2020 08:26:14 +0000 emerge -qpvO sci-biology/embassy-phylipnew [ebuild N ] sci-biology/embassy-phylipnew-3.69.660 USE="-X -mysql -pdf -png -postgres -static-libs"
Created attachment 604564 [details] emerge-info.txt
Created attachment 604566 [details] emerge-history.txt
Created attachment 604568 [details] environment
Created attachment 604570 [details] etc.portage.tbz2
Created attachment 604572 [details] logs.tbz2
Created attachment 604574 [details] sci-biology:embassy-phylipnew-3.69.660:20200126-094738.log
Created attachment 604576 [details] temp.tbz2
*** Bug 720988 has been marked as a duplicate of this bug. ***
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=083397d51c3f9bcbaf890477633ee33660e9155f commit 083397d51c3f9bcbaf890477633ee33660e9155f Author: David Seifert <soap@gentoo.org> AuthorDate: 2020-11-01 18:36:05 +0000 Commit: David Seifert <soap@gentoo.org> CommitDate: 2020-11-01 18:36:05 +0000 sci-biology/embassy-phylipnew: Fix -fno-common Closes: https://bugs.gentoo.org/706414 Package-Manager: Portage-3.0.8, Repoman-3.0.2 Signed-off-by: David Seifert <soap@gentoo.org> .../embassy-phylipnew-3.69.660.ebuild | 7 +- .../embassy-phylipnew-3.69.650-fno-common.patch | 627 +++++++++++++++++++++ 2 files changed, 632 insertions(+), 2 deletions(-)
