Bug 720988 – sci-biology/embassy-phylipnew-3.69.660 : /.../ld: error: disc.o: multiple definition of phylostates

• Status: RESOLVED DUPLICATE of bug 706414
• Product: Gentoo Linux

[Description Toralf Förster 2020-05-04 19:14:07 UTC]

libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -falign-functions=32:25:16 -fno-common -O2 -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o fclique clique.o disc.o phylip.o  -Wl,--as-needed -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lm
/usr/lib/gcc/x86_64-pc-linux-gnu/9.3.0/../../../../x86_64-pc-linux-gnu/bin/ld: error: disc.o: multiple definition of phylostates
/usr/lib/gcc/x86_64-pc-linux-gnu/9.3.0/../../../../x86_64-pc-linux-gnu/bin/ld: clique.o: previous definition here
/usr/lib/gcc/x86_64-pc-linux-gnu/9.3.0/../../../../x86_64-pc-linux-gnu/bin/ld: error: phylip.o: multiple definition of embossouttree
/usr/lib/gcc/x86_64-pc-linux-gnu/9.3.0/../../../../x86_64-pc-linux-gnu/bin/ld: clique.o: previous definition here

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  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_hardened-abi32+64-20200503-182741

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gcc-config -l:
 [1] x86_64-pc-linux-gnu-9.3.0 *
Available Python interpreters, in order of preference:
  [1]   python3.7 (uninstalled)
  [2]   python3.6
  [3]   python3.8 (fallback)
  [4]   python2.7 (fallback)
Available Ruby profiles:
  [1]   ruby24 (with Rubygems)
  [2]   ruby25 (with Rubygems) *
The Glorious Glasgow Haskell Compilation System, version 8.0.2

  timestamp(s) of HEAD at this tinderbox image:
/var/db/repos/gentoo	Mon 04 May 2020 05:11:04 PM UTC

emerge -qpvO sci-biology/embassy-phylipnew
[ebuild  N    ] sci-biology/embassy-phylipnew-3.69.660  USE="-X -mysql -pdf -png -postgres -static-libs"

[Comment 1 Toralf Förster 2020-05-04 19:14:10 UTC]

Created attachment 636042 [details]
emerge-info.txt

[Comment 2 Toralf Förster 2020-05-04 19:14:13 UTC]

Created attachment 636044 [details]
emerge-history.txt

[Comment 3 Toralf Förster 2020-05-04 19:14:16 UTC]

Created attachment 636046 [details]
environment

[Comment 4 Toralf Förster 2020-05-04 19:14:18 UTC]

Created attachment 636048 [details]
etc.portage.tbz2

[Comment 5 Toralf Förster 2020-05-04 19:14:21 UTC]

Created attachment 636050 [details]
logs.tbz2

[Comment 6 Toralf Förster 2020-05-04 19:14:24 UTC]

Created attachment 636052 [details]
sci-biology:embassy-phylipnew-3.69.660:20200504-190241.log

[Comment 7 Toralf Förster 2020-05-04 19:14:27 UTC]

Created attachment 636054 [details]
temp.tbz2

[Comment 8 Jeroen Roovers (RETIRED) 2020-05-21 11:49:21 UTC]

*** This bug has been marked as a duplicate of bug 706414 ***