Output written on gromacs.pdf (558 pages, 12352527 bytes). Transcript written on gromacs.log. ninja: build stopped: subcommand failed. * ERROR: sci-chemistry/gromacs-2019.3::gentoo failed (compile phase): * ninja -v -j1 -l0 manual failed * ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.1-desktop-gnome-systemd_20190608-211904 ------------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-9.1.0 * Available Python interpreters, in order of preference: [1] python3.6 [2] python2.7 (fallback) Available Ruby profiles: [1] ruby24 (with Rubygems) * Available Rust versions: [1] rust-1.35.0 * java-config: The following VMs are available for generation-2: 1) IcedTea JDK 3.12.0 [icedtea-8] *) IcedTea JDK 3.12.0 [icedtea-bin-8] Available Java Virtual Machines: [1] icedtea-8 [2] icedtea-bin-8 system-vm emerge -qpvO sci-chemistry/gromacs [ebuild U ] sci-chemistry/gromacs-2019.3 [2018.7] USE="X doc fftw gmxapi%* hwloc lmfit%* offensive openmp single-precision threads tng -blas -cuda -double-precision -lapack -mkl -mpi -opencl -test" CPU_FLAGS_X86="avx avx2 sse2 sse4_1 -fma4" PYTHON_TARGETS="python2_7%*"
according to last comment in bug #673340 this is another issue then?
Created attachment 579780 [details] emerge-info.txt
Created attachment 579782 [details] emerge-history.txt
Created attachment 579784 [details] environment
Created attachment 579786 [details] etc.portage.tbz2
Created attachment 579788 [details] logs.tbz2
Created attachment 579790 [details] sci-chemistry:gromacs-2019.3:20190614-155922.log.bz2
Created attachment 579792 [details] temp.tbz2
Looks like i missing some deps... So i'll try to check it with pure stage3 lxc container
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c89206b88338218fcfd234e0977940c24e526ae6 commit c89206b88338218fcfd234e0977940c24e526ae6 Author: Alexey Shvetsov <alexxy@gentoo.org> AuthorDate: 2019-07-07 14:30:15 +0000 Commit: Alexey Shvetsov <alexxy@gentoo.org> CommitDate: 2019-07-07 14:30:15 +0000 sci-chemistry/gromacs: Add missing dep for docs GROMACS need graphviz to build doc Closes: https://bugs.gentoo.org/688074 Package-Manager: Portage-2.3.68, Repoman-2.3.16 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org> sci-chemistry/gromacs/gromacs-2019.2.ebuild | 1 + sci-chemistry/gromacs/gromacs-2019.3.ebuild | 1 + sci-chemistry/gromacs/gromacs-2019.9999.ebuild | 1 + 3 files changed, 3 insertions(+)