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Bug 673340 - sci-chemistry/gromacs-2019_rc1 : ninja: build stopped: subcommand failed.
Summary: sci-chemistry/gromacs-2019_rc1 : ninja: build stopped: subcommand failed.
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Alexey Shvetsov
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2018-12-17 16:10 UTC by Toralf Förster
Modified: 2019-06-03 07:06 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,16.93 KB, text/plain)
2018-12-17 16:10 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,237.00 KB, text/plain)
2018-12-17 16:10 UTC, Toralf Förster
Details
environment (environment,164.51 KB, text/plain)
2018-12-17 16:10 UTC, Toralf Förster
Details
etc.portage.tbz2 (etc.portage.tbz2,12.67 KB, application/x-bzip)
2018-12-17 16:10 UTC, Toralf Förster
Details
logs.tbz2 (logs.tbz2,79.46 KB, application/x-bzip)
2018-12-17 16:10 UTC, Toralf Förster
Details
sci-chemistry:gromacs-2019_rc1:20181217-153654.log.bz2 (sci-chemistry:gromacs-2019_rc1:20181217-153654.log.bz2,86.69 KB, application/x-bzip)
2018-12-17 16:11 UTC, Toralf Förster
Details
temp.tbz2 (temp.tbz2,122.98 KB, application/x-bzip)
2018-12-17 16:11 UTC, Toralf Förster
Details
emerge-info.txt (emerge-info.txt,16.74 KB, text/plain)
2019-02-19 19:39 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,184.01 KB, text/plain)
2019-02-19 19:39 UTC, Toralf Förster
Details
environment (environment,165.30 KB, text/plain)
2019-02-19 19:39 UTC, Toralf Förster
Details
etc.portage.tbz2 (etc.portage.tbz2,14.46 KB, application/x-bzip)
2019-02-19 19:39 UTC, Toralf Förster
Details
logs.tbz2 (logs.tbz2,79.89 KB, application/x-bzip)
2019-02-19 19:39 UTC, Toralf Förster
Details
sci-chemistry:gromacs-2019.1:20190219-184539.log.bz2 (sci-chemistry:gromacs-2019.1:20190219-184539.log.bz2,87.00 KB, application/x-bzip)
2019-02-19 19:39 UTC, Toralf Förster
Details
temp.tbz2 (temp.tbz2,123.44 KB, application/x-bzip)
2019-02-19 19:39 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2018-12-17 16:10:44 UTC
Output written on gromacs.pdf (578 pages, 12358730 bytes).
Transcript written on gromacs.log.
ninja: build stopped: subcommand failed.
 * ERROR: sci-chemistry/gromacs-2019_rc1::gentoo failed (compile phase):
 *   ninja -v -j1 -l0 manual failed
 * 

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.0-desktop-gnome_20181212-070935

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-8.2.0 *

Available Python interpreters, in order of preference:
  [1]   python3.7
  [2]   python3.6
  [3]   python2.7 (fallback)
  [4]   pypy (fallback)
Available Ruby profiles:
  [1]   ruby23 (with Rubygems)
  [2]   ruby24 (with Rubygems)
  [3]   ruby25 (with Rubygems) *
Available Rust versions:
  [1]   rust-1.31.0 *
java-config:
The following VMs are available for generation-2:
*)	IcedTea JDK 3.9.0 [icedtea-bin-8]
Available Java Virtual Machines:
  [1]   icedtea-bin-8  system-vm

emerge -qpvO sci-chemistry/gromacs
[ebuild  N    ] sci-chemistry/gromacs-2019_rc1  USE="X doc fftw gmxapi hwloc lmfit offensive openmp single-precision threads tng -blas -cuda -double-precision -lapack -mkl -mpi -opencl -test" CPU_FLAGS_X86="avx avx2 sse2 sse4_1 -fma4" PYTHON_TARGETS="python2_7"
Comment 1 Toralf Förster gentoo-dev 2018-12-17 16:10:47 UTC
Created attachment 557996 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2018-12-17 16:10:50 UTC
Created attachment 557998 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2018-12-17 16:10:53 UTC
Created attachment 558000 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2018-12-17 16:10:56 UTC
Created attachment 558002 [details]
etc.portage.tbz2
Comment 5 Toralf Förster gentoo-dev 2018-12-17 16:10:58 UTC
Created attachment 558004 [details]
logs.tbz2
Comment 6 Toralf Förster gentoo-dev 2018-12-17 16:11:01 UTC
Created attachment 558006 [details]
sci-chemistry:gromacs-2019_rc1:20181217-153654.log.bz2
Comment 7 Toralf Förster gentoo-dev 2018-12-17 16:11:04 UTC
Created attachment 558008 [details]
temp.tbz2
Comment 8 Larry the Git Cow gentoo-dev 2019-02-18 11:55:38 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3815b25d5f2b4606ad17095b3f8591e827f0a876

commit 3815b25d5f2b4606ad17095b3f8591e827f0a876
Author:     Alexey Shvetsov <alexxy@gentoo.org>
AuthorDate: 2019-02-18 11:54:28 +0000
Commit:     Alexey Shvetsov <alexxy@gentoo.org>
CommitDate: 2019-02-18 11:55:10 +0000

    sci-chemistry/gromacs: Version bump
    
    Closes: https://bugs.gentoo.org/673350
    Closes: https://bugs.gentoo.org/673340
    Closes: https://bugs.gentoo.org/670846
    Closes: https://bugs.gentoo.org/669460
    Closes: https://bugs.gentoo.org/591952
    Package-Manager: Portage-2.3.61, Repoman-2.3.12
    Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>

 sci-chemistry/gromacs/Manifest              |   2 +
 sci-chemistry/gromacs/gromacs-2019.1.ebuild | 307 ++++++++++++++++++++++++++++
 2 files changed, 309 insertions(+)
Comment 9 Toralf Förster gentoo-dev 2019-02-19 19:39:38 UTC
got at the unstable amd64 chroot image 17.1-desktop-gnome_20190214-164528 this : ninja: build stopped: subcommand failed.
Comment 10 Toralf Förster gentoo-dev 2019-02-19 19:39:40 UTC
Created attachment 565910 [details]
emerge-info.txt
Comment 11 Toralf Förster gentoo-dev 2019-02-19 19:39:43 UTC
Created attachment 565912 [details]
emerge-history.txt
Comment 12 Toralf Förster gentoo-dev 2019-02-19 19:39:46 UTC
Created attachment 565914 [details]
environment
Comment 13 Toralf Förster gentoo-dev 2019-02-19 19:39:48 UTC
Created attachment 565916 [details]
etc.portage.tbz2
Comment 14 Toralf Förster gentoo-dev 2019-02-19 19:39:51 UTC
Created attachment 565918 [details]
logs.tbz2
Comment 15 Toralf Förster gentoo-dev 2019-02-19 19:39:54 UTC
Created attachment 565920 [details]
sci-chemistry:gromacs-2019.1:20190219-184539.log.bz2
Comment 16 Toralf Förster gentoo-dev 2019-02-19 19:39:56 UTC
Created attachment 565922 [details]
temp.tbz2
Comment 17 Alexey Shvetsov archtester gentoo-dev 2019-06-03 07:06:16 UTC
Was fixed somewhere around 2019.1