x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"4.0.2\" -DPACKAGE_STRING=\"mira\ 4.0.2\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"4.0.2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNIST ads.C: In static member function ‘static bool AlignedDualSeq::staticInitialiser()’: ads.C:76:58: error: ‘pow’ was not declared in this scope ADS_powofstarcounter[i]=pow(.9,static_cast<double>(i)); ^ make[5]: *** [Makefile:620: ads.o] Error 1 $ cat emerge-info.txt ----------------------------------------------------------------- This is an unstable amd64 chroot image (named amd64-hardened-no-multilib-unstable_20160605-224704) at a hardened host acting as a tinderbox. ----------------------------------------------------------------- make.conf: USE="sse2 pax_kernel xtpax -cdinstall -oci8 -bindist -alisp apache bzip2 cgoups dane -dvb -eglfs extraengine -gles gstreamer gtkstyle -gudev gui hdf5 kerberos kvm -latex modplug ncurses -networking opencv python rendering spice ssh ssh-askpass svg system-harfbuzz vorbis webstart xinerama xvfb" ----------------------------------------------------------------- Portage 2.3.0_rc1 (python 3.4.4-final-0, hardened/linux/amd64/no-multilib, gcc-5.4.0, glibc-2.23-r2, 4.5.7-hardened-r1 x86_64) ================================================================= System uname: Linux-4.5.7-hardened-r1-x86_64-Intel-R-_Core-TM-_i7-3770_CPU_@_3.40GHz-with-gentoo-2.2 KiB Mem: 16157888 total, 2873988 free KiB Swap: 16777212 total, 16695980 free Timestamp of repository gentoo: Tue, 14 Jun 2016 12:42:09 +0000 sh bash 4.3_p42-r2 ld GNU ld (Gentoo 2.25.1 p1.1) 2.25.1 ccache version 3.2.5 [disabled] app-shells/bash: 4.3_p42-r2::gentoo dev-java/java-config: 2.2.0-r3::gentoo dev-lang/perl: 5.24.0-r1::gentoo dev-lang/python: 2.7.11-r2::gentoo, 3.4.4::gentoo, 3.5.1-r3::gentoo dev-util/ccache: 3.2.5::gentoo dev-util/cmake: 3.5.2-r1::gentoo sys-apps/baselayout: 2.2::gentoo sys-apps/openrc: 0.21::gentoo sys-apps/sandbox: 2.10-r2::gentoo sys-devel/autoconf: 2.13::gentoo, 2.69-r2::gentoo sys-devel/automake: 1.9.6-r4::gentoo, 1.10.3-r2::gentoo, 1.11.6-r2::gentoo, 1.12.6-r1::gentoo, 1.13.4-r1::gentoo, 1.14.1-r1::gentoo, 1.15-r2::gentoo sys-devel/binutils: 2.25.1-r1::gentoo sys-devel/gcc: 5.4.0::gentoo sys-devel/gcc-config: 1.8-r1::gentoo sys-devel/libtool: 2.4.6-r2::gentoo sys-devel/make: 4.2.1::gentoo sys-kernel/linux-headers: 4.6::gentoo (virtual/os-headers) sys-libs/glibc: 2.23-r2::gentoo Repositories: gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: 1 local location: /usr/local/portage masters: gentoo priority: 2 ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/config /usr/share/easy-rsa /usr/share/gnupg/qualified.txt /var/lib/i2pd/certificates /var/rancid/.cloginrc" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.5/ext-active/ /etc/php/apache2-php7.0/ext-active/ /etc/php/cgi-php5.5/ext-active/ /etc/php/cgi-php7.0/ext-active/ /etc/php/cli-php5.5/ext-active/ /etc/php/cli-php7.0/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=native -O2 -pipe" DISTDIR="/var/tmp/distfiles" EMERGE_DEFAULT_OPTS="--verbose-conflicts --color=n --nospinner --tree --quiet-build" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox parallel-fetch preserve-libs protect-owned sandbox sfperms strict test-fail-continue unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo rsync://mirror.netcologne.de/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gor.bytemark.co.uk/gentoo/ rsync://ftp.snt.utwente.nl/gentoo" LANG="en_US.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j1" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" USE="acl amd64 apache berkdb bzip2 cgoups cli cracklib crypt cxx dane dri extraengine gdbm gstreamer gtkstyle gui hardened hdf5 iconv ipv6 justify kerberos kvm mmx mmxext modplug modules ncurses nls nptl opencv openmp pam pax_kernel pcre pie python readline rendering seccomp session spice sse sse2 ssh ssh-askpass ssl ssp svg system-harfbuzz tcpd unicode urandom vorbis webstart xattr xinerama xtpax xvfb zlib" ABI_X86="64" ALSA_CARDS="hda-intel" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="evdev synaptics" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby20 ruby21" USERLAND="GNU" VIDEO_CARDS="intel i965" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Created attachment 437526 [details] emerge-history.txt
Created attachment 437528 [details] environment
Created attachment 437530 [details] sci-biology:mira-4.0.2:20160614-151330.log
Most likely missing include of cmath/math.h. As there is no git repo (or similar) I can't look for a fixup commit.
The bug has been referenced in the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=9e8a002fb82a9b317dd6d3cf60359d0315201798 commit 9e8a002fb82a9b317dd6d3cf60359d0315201798 Author: David Seifert <soap@gentoo.org> AuthorDate: 2021-08-29 10:38:17 +0000 Commit: David Seifert <soap@gentoo.org> CommitDate: 2021-08-29 10:38:17 +0000 profiles: last-rite sci-biology/mira Bug: https://bugs.gentoo.org/585942 Bug: https://bugs.gentoo.org/731880 Bug: https://bugs.gentoo.org/808667 Signed-off-by: David Seifert <soap@gentoo.org> profiles/package.mask | 7 +++++++ 1 file changed, 7 insertions(+)
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=35d98adecae341f50c42caf4cea4bb264a57fd67 commit 35d98adecae341f50c42caf4cea4bb264a57fd67 Author: Jakov Smolić <jsmolic@gentoo.org> AuthorDate: 2021-09-28 14:31:19 +0000 Commit: Jakov Smolić <jsmolic@gentoo.org> CommitDate: 2021-09-28 14:31:19 +0000 sci-biology/mira: Remove last-rited package Closes: https://bugs.gentoo.org/808667 Closes: https://bugs.gentoo.org/585942 Closes: https://bugs.gentoo.org/731880 Signed-off-by: Jakov Smolić <jsmolic@gentoo.org> profiles/package.mask | 7 -- sci-biology/mira/Manifest | 2 - sci-biology/mira/files/mira-4.0.2-boost-1.50.patch | 22 ----- sci-biology/mira/files/mira-4.0.2-cmath.patch | 14 ---- sci-biology/mira/files/mira-4.0.2-cout.patch | 27 ------ sci-biology/mira/metadata.xml | 11 --- sci-biology/mira/mira-4.0.2-r1.ebuild | 97 ---------------------- 7 files changed, 180 deletions(-)
