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Bug 138049 - [TRACKER] Scientific Gentoo reorg
Summary: [TRACKER] Scientific Gentoo reorg
Status: RESOLVED WORKSFORME
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: [OLD] Unspecified (show other bugs)
Hardware: All Linux
: High normal (vote)
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords: Tracker
Depends on: 138059 138061 138062 138069 138704 138711 139682 148281
Blocks:
  Show dependency tree
 
Reported: 2006-06-26 07:26 UTC by George Shapovalov (RETIRED)
Modified: 2017-01-19 19:43 UTC (History)
6 users (show)

See Also:
Package list:
Runtime testing required: ---


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Description George Shapovalov (RETIRED) gentoo-dev 2006-06-26 07:26:17 UTC
Looks like it is a time to create a bug to track reorg progress. I will post the proposed list (so far only 1 reject to the list of involved people) here. If there is an expected non-trivial discussion of some particular category/herd, please create a separate bug and make it blocking this one, so that we can stay organized..

Proposed herd names have sci- stripped, but I am not sure how to go about that really atm..

The preliminary split:
category: #packages (proposed herd name), comment if any

sci-astronomy: 11 (astronomy)
morfic, phosphan, zx, ribosome, aliz, corsair, mr_bones_

sci-biology:  58 (bio?)
ribosome, corsair, j4rg0n, mcummings, sediener, pbienst, apokorny, 
hansmi?, phosphan, lostlogic?

sci-calculators:  26 (calc?)
centic?, cryos, ribosome, spyderous?

sci-chemistry:  50 (chem?), sci-crystallography was proposed to split off
spyderous, markusle?, phosphan, marcus, hannes, ribosome?, kugelfang, 
agriffis, hansmi?

sci-electronics:  34 (electronics?)
calchan, chrb?, agriffis?, phosphan, ribosome, plasmaroo, hansmi, 
cryos?, gustavoz?

sci-geosciences:  8  (geosci?)
ribosome, spyderous, cryos, nerdboy, mholzer?

sci-mathematics:  34  (math?), interest in sci-proof was mentioned, possible split in symbolic and numeric..
plasmaroo, agriffis?, mattam, cryos, ribosome?, markusle, spock, phosphan

sci-misc:  19 (sci)
cryos, hansmi?, phosphan, ribosome, kugelfang?, pbienst

sci-visualization:  20 (??)
markusle, phosphan, ribosome, cryos, kugelfang, latexer?, j4rg0n?, corsair?, 
spyderous


Looks like we can have new categories: 
sci-crystallography - seems to be enough packages and maintainers
sci-mathematics may be split into symbolic and numeric (anybody to really comment?).

Few more categories-to-be if there is enough "material". May start as herds under -misc or something more related:
sci-cad (cad?)
sci-physics (physics?)
sci-linguistics (??)

George
Comment 1 George Shapovalov (RETIRED) gentoo-dev 2006-06-26 07:33:22 UTC
A short note:

It may not be worth trying to get it all done at once - this is mostly "internal stuff" and I am not going to push anybody who is not going to put 5 minutes into thinking about it. However lets at least split off the ones where there is an interest. So, the procedure could be:

1. Create a bug for the herd/new category, listing packages and involved devs.
2. Let people comment - would one week be enough
3. Create a herd or category (if there are enough packages) and adjust metadata/move stuff around..

How about this approach?

The "to be" herds that have seemingly shown enough interest:
crystallography,
sci-math-proof,
electronics
?physics?

George
Comment 2 Luis Medinas (RETIRED) gentoo-dev 2006-06-26 08:43:04 UTC
Ok i'll take a look at some physics related packages and start a new category for it if it's needed. I'm offering help to take care of physics packages and start a "sub-project" for physics if noone is against it.
Comment 3 Donnie Berkholz (RETIRED) gentoo-dev 2006-06-26 08:51:11 UTC
Herds I should probably be in: chemistry, biology, crystallography, visualization, maybe physics. Not calculators or geosciences.
Comment 4 Markus Dittrich (RETIRED) gentoo-dev 2006-06-26 10:12:58 UTC
I would definitely like to contribute to sci-physics.
Otherwise I'd like to be in chemistry, biology, and visualization since this
is where my personal and professional interests are.
Comment 5 Marcus D. Hanwell (RETIRED) gentoo-dev 2006-06-26 11:42:30 UTC
Been really busy as of late, so haven't contributed as much as I might have to the discussion. The marcus dev is actually me when the environment variable wasn't set for a few months... Doh! So marcus = cryos. I can see the point to splitting off the sci herd if people really are getting worried about its size and it is scaring them away.

I have been very busy lately and so Gentoo has not received as much time as usual. I would definitely support a sci-physics herd and category if there were the packages. I would also like to be in it. I would join astronomy (maybe), calculators, chemistry, electronics, geosciences, mathematics, misc and visualisation. I would be in favour of shorter names, but can live with the longer ones. I think sci-crystallography would arguably work well in sci-physics, but if not I would probably join sci-crystallography too as I do work with X-ray/neutron diffraction and reflection.

I think we should be a top level project though and would fully support that. Our herd testers and overlay are doing pretty well too. Hoping to catch them on IRC soon too.
Comment 6 Donnie Berkholz (RETIRED) gentoo-dev 2006-06-26 12:06:06 UTC
(In reply to comment #5)
> longer ones. I think sci-crystallography would arguably work well in
> sci-physics, but if not I would probably join sci-crystallography too as I do
> work with X-ray/neutron diffraction and reflection.

As a protein crystallographer, I simply can't support this. =)
Comment 7 Luis Medinas (RETIRED) gentoo-dev 2006-06-26 18:51:08 UTC
If there is something related to physics imo this are the packages i saw:
please add any i missed

/sci-misc/camfr
sci-misc/lightspeed
sci-misc/mpb/
sci-misc/oww ?
sci-misc/xfoil
sci-astronomy/maestro
sci-chemistry/shelx
sci-chemistry/rasmol
sci-chemistry/probe/
sci-chemistry/platon
sci-chemistry/ortep3
sci-chemistry/molmol
sci-chemistry/moldy/
sci-chemistry/molden
sci-chemistry/mead/
sci-chemistry/maid
sci-chemistry/eden
sci-chemistry/cns/
sci-chemistry/abinit

a few sci-chemistry packages like molmol is used in both chemistry and physics (for solid state).
Comment 8 Olivier Fisette (RETIRED) gentoo-dev 2006-06-26 18:58:09 UTC
Herds I should be a member of: biology, chemistry, calculators and mathematics. Not astronomy, electronics or geosciences.
Comment 9 Jan Marten Simons 2006-06-27 05:17:50 UTC
(In reply to comment #6)
> (In reply to comment #5)
> > longer ones. I think sci-crystallography would arguably work well in
> > sci-physics, but if not I would probably join sci-crystallography too as I do
> > work with X-ray/neutron diffraction and reflection.
> 
> As a protein crystallographer, I simply can't support this. =)
> 

I think crystallography should be placed as a new top-level sci-category (sci-crystallography), as it does not belong to either physics, chemistry, biology or math strictly, but all of those use and contribute to this special science.
Comment 10 Donnie Berkholz (RETIRED) gentoo-dev 2006-06-27 08:55:42 UTC
(In reply to comment #7)
> If there is something related to physics imo this are the packages i saw:
> please add any i missed

> sci-chemistry/shelx
> sci-chemistry/rasmol
> sci-chemistry/probe
> sci-chemistry/platon
> sci-chemistry/ortep3
> sci-chemistry/molmol
> sci-chemistry/moldy
> sci-chemistry/molden
> sci-chemistry/mead
> sci-chemistry/maid
> sci-chemistry/eden
> sci-chemistry/cns

I will not support moving any of the above to physics, although I would support sci-crystallography for those related to it.

> sci-chemistry/abinit

This should probably be in a sci-physics, as well as the CAMPOS ebuilds in Bugzilla somewhere.
Comment 11 Luis Medinas (RETIRED) gentoo-dev 2006-06-27 09:14:09 UTC
i understand but i use molmol and molden for studing element structures in solid state physics. This is a little difficult to organize since yes it could be on crystallography
Comment 12 Donnie Berkholz (RETIRED) gentoo-dev 2006-06-27 09:31:23 UTC
(In reply to comment #11)
> i understand but i use molmol and molden for studing element structures in
> solid state physics. This is a little difficult to organize since yes it could
> be on crystallography

We could consider moving them to sci-visualization, but they seem good enough where they are and it's more valuable to me to retain the CVS history.
Comment 13 Sébastien Fabbro (RETIRED) gentoo-dev 2006-06-30 02:37:54 UTC
I could contribute to sci-physics, sci-astronomy, sci-libs and some dev-python packages related to science. My specialty is cosmology and high energy physics. I did some ebuilds in the scientific overlay (as bicatali), and has contributed some bugs, as a sci herd tester. By the way, doesn't the scientific overlay, which was also created for beginners to train on package maintaining, overlap with the mentoring process?
Comment 14 Luis Medinas (RETIRED) gentoo-dev 2006-07-01 07:21:05 UTC
Sebastian please add yourself to bug 138711 so we can discuss a bit.
Comment 15 Lucas Chiesa 2006-07-03 19:57:52 UTC
As Sebastien, I'm a herd tester. I would like to contribute to sci-electronics and sci-mathematics mainly, and to sci-visualization and sci-physics in a smaller amount.

Thanks,

Lucas Chiesa (tulku)
Comment 16 Luis Medinas (RETIRED) gentoo-dev 2006-07-08 09:36:20 UTC
Everyone that want's to be on sci-mathematics herd please join bug 139682. For Herd Testers after get this reorg done we will start working again for induvidual herds. Since sci-physics is done, feel free to send me an email or talk with me on #gentoo-science so i can add you to sci-physics alias and start working again.

Thanks
Comment 17 Luis Medinas (RETIRED) gentoo-dev 2006-07-28 09:47:10 UTC
It's time to create sci-mathematics sub project. Should we take sci-calculators packages too ? Everyone interested please add yourself to bug 139682 and start discuss about the new sub project.
Comment 18 Donnie Berkholz (RETIRED) gentoo-dev 2006-09-26 00:45:36 UTC
I'm kinda wondering whether the blas and lapack stuff deserves its own herd.

blas-reference
lapack-reference
cblas-reference
blas-atlas
lapack-atlas
acml
mkl
eselect-blas
eselect-lapack
eselect-cblas
lapack-config
blas-config (both *-config dead soon)
Comment 19 Jeffrey Gardner (RETIRED) gentoo-dev 2006-09-26 06:07:13 UTC
I'd say put them in sci-mathematics, or keep sci-libs.
Comment 20 Sébastien Fabbro (RETIRED) gentoo-dev 2006-09-26 07:01:34 UTC
How about a sci-numerics, or rather a math-numerics, since math-proof is on its way. With crunching-number and numerical analysis packages:

sci-libs/acml
sci-libs/blas-atlas
sci-libs/blas-reference
sci-libs/cblas-reference
sci-libs/cln
sci-libs/djbfft
sci-libs/fftw
sci-libs/gsl
sci-libs/lapack-atlas
sci-libs/lapack-reference
sci-libs/mkl
sci-libs/scipy

sci-mathematics/glpk
sci-mathematics/octave
sci-mathematics/scilab

From the gentooscience overlay:
sci-libs/arpack
sci-libs/minuit
sci-libs/umfpack

And other that I certainly forget.
Comment 21 Andreas K. Hüttel archtester gentoo-dev 2010-06-30 17:55:58 UTC
Very much outdated and forgotten.