Bug 940694 – sci-biology/seqan-3.1.0 - [libtool] [gcc-15] -- Configuring incomplete, errors occurred!

• Status: CONFIRMED
• Product: Gentoo Linux

[Description Toralf Förster 2024-10-03 08:15:00 UTC]

  https://github.com/xxsds/sdsl-lite
Call Stack (most recent call first):
  build_system/seqan3-config.cmake:379 (seqan3_config_error)
  CMakeLists.txt:29 (find_package)


-- Configuring incomplete, errors occurred!
 * ERROR: sci-biology/seqan-3.1.0::gentoo failed (configure phase):
 *   cmake failed

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 23.0_no_multilib_hardened-20241001-192503

  UNMASKED:
  /etc/portage/package.unmask/60gcc:<sys-devel/gcc-15.0.9999:15
    Requested by sam

  The attached etc.portage.tar.xz has all details.
  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-15 *
clang/llvm (if any):
clang version 19.1.1
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/19/bin
Configuration file: /etc/clang/x86_64-pc-linux-gnu-clang.cfg
/usr/lib/llvm/19
19.1.1
Python 3.12.7
Available Rust versions:
  [1]   rust-bin-1.81.0 *
The Glorious Glasgow Haskell Compilation System, version 9.2.8
php cli (if any):

  HEAD of ::gentoo
commit 615cee5fcc43fda4269bdd3698af3d273b97708e
Author: Repository mirror & CI <[e-mail]>
Date:   Wed Oct 2 21:03:56 2024 +0000

    2024-10-02 21:03:56 UTC

emerge -qpvO =sci-biology/seqan-3.1.0
[ebuild  N    ] sci-biology/seqan-3.1.0  CPU_FLAGS_X86="sse4_2"

[Comment 1 Toralf Förster 2024-10-03 08:15:01 UTC]

Created attachment 904736 [details]
emerge-info.txt

[Comment 2 Toralf Förster 2024-10-03 08:15:02 UTC]

Created attachment 904737 [details]
emerge-history.txt

[Comment 3 Toralf Förster 2024-10-03 08:15:03 UTC]

Created attachment 904738 [details]
environment

[Comment 4 Toralf Förster 2024-10-03 08:15:04 UTC]

Created attachment 904739 [details]
etc.clang.tar.xz

[Comment 5 Toralf Förster 2024-10-03 08:15:05 UTC]

Created attachment 904740 [details]
etc.portage.tar.xz

[Comment 6 Toralf Förster 2024-10-03 08:15:06 UTC]

Created attachment 904741 [details]
qlist-info.txt

[Comment 7 Toralf Förster 2024-10-03 08:15:07 UTC]

Created attachment 904742 [details]
sci-biology:seqan-3.1.0:20241002-225434.log

[Comment 8 Toralf Förster 2024-10-03 08:15:08 UTC]

Created attachment 904743 [details]
temp.tar.xz