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Bug 929751 - sci-biology/bedtools: needs upgrade to Python 3.12 (PythonCompatUpdate)
Summary: sci-biology/bedtools: needs upgrade to Python 3.12 (PythonCompatUpdate)
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All All
: Normal normal (vote)
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks: 921826
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Reported: 2024-04-13 08:51 UTC by Michał Górny
Modified: 2024-04-25 09:38 UTC (History)
0 users

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Package list:
Runtime testing required: ---

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Description Michał Górny archtester Gentoo Infrastructure gentoo-dev Security 2024-04-13 08:51:15 UTC 
This package does not support Python 3.12.  Please test it with Python 3.12 as a matter of urgency as the default will change in early June, as per message on gentoo-dev: https://www.mail-archive.com/gentoo-dev@lists.gentoo.org/msg99104.html.  Please check the information provided in the tracker.  Ask in #gentoo-python on IRC if need any help.
Comment 1 Larry the Git Cow gentoo-dev 2024-04-25 09:38:01 UTC 
The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=6659d55f12a3e8b75dbf9545cac23f37ca00bd58

commit 6659d55f12a3e8b75dbf9545cac23f37ca00bd58
Author:     David Seifert <soap@gentoo.org>
AuthorDate: 2024-04-25 09:37:47 +0000
Commit:     David Seifert <soap@gentoo.org>
CommitDate: 2024-04-25 09:37:47 +0000

    sci-biology/bedtools: add 2.31.1
    
    Bug: https://bugs.gentoo.org/881783
    Bug: https://bugs.gentoo.org/907971
    Bug: https://bugs.gentoo.org/929751
    Signed-off-by: David Seifert <soap@gentoo.org>

 sci-biology/bedtools/Manifest                      |   1 +
 sci-biology/bedtools/bedtools-2.31.1.ebuild        |  49 ++++++
 .../files/bedtools-2.31.1-buildsystem.patch        |  84 ++++++++++
 .../bedtools/files/bedtools-2.31.1-includes.patch  | 178 +++++++++++++++++++++
 .../bedtools/files/bedtools-2.31.1-python.patch    |  40 +++++
 5 files changed, 352 insertions(+)