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Bug 927837 - dev-build/libtool-2.4.7-r3 binary package is incompatible with 23.0 split-usr profiles
Summary: dev-build/libtool-2.4.7-r3 binary package is incompatible with 23.0 split-usr...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo's Team for Core System packages
URL:
Whiteboard:
Keywords:
: 912289 927857 (view as bug list)
Depends on:
Blocks: usrmerge, usrmerge-fixes
  Show dependency tree
 
Reported: 2024-03-25 22:06 UTC by Andreas Grois
Modified: 2024-04-06 07:55 UTC (History)
3 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build log for dev-libs/libgcrypt-1.10.3-r1 with dev-build/libtool-2.4.7-r3 installed from the binary package (build.log,22.36 KB, text/x-log)
2024-03-25 22:06 UTC, Andreas Grois
Details

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Description Andreas Grois 2024-03-25 22:06:48 UTC
Created attachment 888579 [details]
build log for dev-libs/libgcrypt-1.10.3-r1 with dev-build/libtool-2.4.7-r3 installed from the binary package

The /usr/bin/libtoolize script installed by the dev-build/libtool-2.4.7-r3 binary package contains a hardcoded path to the grep binary, which is /usr/bin/grep. However, in the split-usr profiles, grep resides in /bin/grep.

If libtool is emerged from source, this issue does not occur (meaning: the path for grep in libtoolize is correct)

The consequence of this is that seemingly unrelated packages, like in my case dev-libs/libgcrypt-1.10.3-r1, fail to compile with libtool version mismatch errors:

libtool: Version mismatch error.  This is libtool 2.4.2 Debian-2.4.2-1, but the
libtool: definition of this LT_INIT comes from libtool 2.4.7.
libtool: You should recreate aclocal.m4 with macros from libtool 2.4.2 Debian-2.4.2-1
libtool: and run autoconf again.

Attached is the build-log for dev-libs/libgcrypt-1.10.3-r1 to showcase the resulting issue.

-----------------------------------------
emerge --info libtool
Portage 3.0.61 (python 3.11.8-final-0, default/linux/arm64/23.0/split-usr/desktop, gcc-13, glibc-2.38-r11, 6.6.21-gentooAndiMNTGentoo aarch64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-6.6.21-gentooAndiMNTGentoo-aarch64-with-glibc2.38
KiB Mem:     3811184 total,    555660 free
KiB Swap:   31249404 total,  31249148 free
Timestamp of repository gentoo: Mon, 25 Mar 2024 18:30:00 +0000
Head commit of repository gentoo: 093b1f1829fed5e67b4372e42ee03abf43cf55dc
sh bash 5.1_p16-r6
ld GNU ld (Gentoo 2.41 p5) 2.41.0
app-misc/pax-utils:        1.3.7::gentoo
app-shells/bash:           5.1_p16-r6::gentoo
dev-build/autoconf:        2.13-r8::gentoo, 2.71-r6::gentoo
dev-build/automake:        1.16.5-r2::gentoo
dev-build/cmake:           3.28.3::gentoo
dev-build/libtool:         2.4.7-r3::gentoo
dev-build/make:            4.4.1-r1::gentoo
dev-build/meson:           1.3.2::gentoo
dev-lang/perl:             5.38.2-r2::gentoo
dev-lang/python:           3.11.8_p1::gentoo, 3.12.2_p1::gentoo
dev-lang/rust-bin:         1.75.0::gentoo
sys-apps/baselayout:       2.14-r2::gentoo
sys-apps/openrc:           0.53::gentoo
sys-apps/sandbox:          2.38::gentoo
sys-devel/binutils:        2.41-r5::gentoo
sys-devel/binutils-config: 5.5::gentoo
sys-devel/clang:           17.0.6::gentoo
sys-devel/gcc:             13.2.1_p20240210::gentoo
sys-devel/gcc-config:      2.11::gentoo
sys-devel/lld:             17.0.6::gentoo
sys-devel/llvm:            17.0.6::gentoo
sys-kernel/linux-headers:  6.6::gentoo (virtual/os-headers)
sys-libs/glibc:            2.38-r11::gentoo
Repositories:

gentoo
    location: /var/db/repos/gentoo
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    volatile: False
    sync-rsync-extra-opts:
    sync-rsync-verify-max-age: 3
    sync-rsync-verify-metamanifest: yes
    sync-rsync-verify-jobs: 1

local
    location: /var/db/repos/local
    masters: gentoo
    volatile: False

Binary Repositories:

gentoobinhost
    priority: 9999
    sync-uri: rsync://mirror.dkm.cz/gentoo/releases/arm64/binpackages/23.0/arm64

ACCEPT_KEYWORDS="arm64"
ACCEPT_LICENSE="@FREE"
CBUILD="aarch64-unknown-linux-gnu"
CFLAGS="-O2 -pipe -mcpu=cortex-a73.cortex-a53+crc+crypto"
CHOST="aarch64-unknown-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -pipe -mcpu=cortex-a73.cortex-a53+crc+crypto"
DISTDIR="/var/cache/distfiles"
EMERGE_DEFAULT_OPTS="-g --usepkg-exclude "sys-apps/openrc dev-build/libtool""
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME"
FCFLAGS="-O2 -pipe -mcpu=cortex-a73.cortex-a53+crc+crypto"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance binpkg-request-signature buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox pkgdir-index-trusted preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe -mcpu=cortex-a73.cortex-a53+crc+crypto"
GENTOO_MIRRORS="rsync://mirror.dkm.cz/gentoo/ http://distfiles.gentoo.org"
LANG="de_AT.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LEX="flex"
LINGUAS="de_AT de en en_GB"
MAKEOPTS="-j6"
PKGDIR="/var/cache/binpkgs"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
SHELL="/bin/bash"
USE="X a52 aac acl acpi alsa arm64 bash-completion bluetooth branding bzip2 cairo cdda crypt cups dbus dri dts dvd egl elogind encode exif fbcon ffmpeg flac gdbm gif gles2 gpm gtk gui iconv icu ipv6 jpeg lcms libnotify libtirpc lzma mad matroska mng mp3 mp4 mpeg musepack ncurses networkmanager nls offensive ogg opengl openmp opus pam pango pcre pdf png policykit ppds readline rss sdl seccomp sound speex spell split-usr ssl startup-notification svg test-rust theora threads tiff timidity truetype udev udisks unicode upower usb vaapi vim-syntax vorbis vulkan wayland wifi wxwidgets x264 xattr xcb xft xml xv xvid zlib zstd" ADA_TARGET="gcc_12" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_anon authn_dbm authn_file authz_dbm authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir env expires ext_filter file_cache filter headers include info log_config logio mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_ARM="aes crc32 edsp sha1 sha2 v8 vfp vfp-d32 vfpv3 vfpv4" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 ntrip navcom oceanserver oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 tsip tripmate tnt ublox" INPUT_DEVICES="libinput" KERNEL="linux" L10N="de-AT de en en-GB" LCD_DEVICES="bayrad cfontz glk hd44780 lb216 lcdm001 mtxorb text" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php8-1" POSTGRES_TARGETS="postgres15" PYTHON_SINGLE_TARGET="python3_11" PYTHON_TARGETS="python3_11" RUBY_TARGETS="ruby31" VIDEO_CARDS="panfrost" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipp2p iface geoip fuzzy condition tarpit sysrq proto logmark ipmark dhcpmac delude chaos account"
Unset:  ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LFLAGS, LIBTOOL, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PYTHONPATH, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS

=================================================================
                        Package Settings
=================================================================

dev-build/libtool-2.4.7-r3::gentoo was built with the following:
USE="-vanilla"
Comment 1 Tim 2024-03-26 06:20:14 UTC
I'm having this exact problem trying to switch to the 23 profile on an arm64 running Raspberry Pi, rebuilding libtool from source instead of using the binary package fixed things, thank you.
Comment 2 Sam James archtester Gentoo Infrastructure gentoo-dev Security 2024-03-26 22:32:35 UTC
*** Bug 927857 has been marked as a duplicate of this bug. ***
Comment 3 Sam James archtester Gentoo Infrastructure gentoo-dev Security 2024-03-26 22:34:16 UTC
Thanks, I'd fixed its path to bash, but not this.
Comment 4 Larry the Git Cow gentoo-dev 2024-03-26 23:03:45 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1c76376ce6ddd5fa26c30de8de00afd775b013f1

commit 1c76376ce6ddd5fa26c30de8de00afd775b013f1
Author:     Sam James <sam@gentoo.org>
AuthorDate: 2024-03-26 22:55:01 +0000
Commit:     Sam James <sam@gentoo.org>
CommitDate: 2024-03-26 23:03:13 +0000

    dev-build/libtool: don't hardcode path to grep & friends
    
    Closes: https://bugs.gentoo.org/927837
    Signed-off-by: Sam James <sam@gentoo.org>

 .../libtool/{libtool-2.4.7-r3.ebuild => libtool-2.4.7-r4.ebuild}  | 8 ++++++--
 dev-build/libtool/libtool-9999.ebuild                             | 8 ++++++--
 2 files changed, 12 insertions(+), 4 deletions(-)
Comment 5 Sam James archtester Gentoo Infrastructure gentoo-dev Security 2024-03-26 23:05:01 UTC
I wonder if we should add some of these as cache vars in profiles.
Comment 6 Sam James archtester Gentoo Infrastructure gentoo-dev Security 2024-03-26 23:29:02 UTC
Thanks for the reports and I'm sorry about the disruption.
Comment 7 Sam James archtester Gentoo Infrastructure gentoo-dev Security 2024-04-06 07:55:18 UTC
*** Bug 912289 has been marked as a duplicate of this bug. ***