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Bug 927387 - sci-biology/qrna-2.0.3c-r3 fails to compile: evolscorewithmodelscanfast.c:307:15: error: type of EvolViterbiRNADiagScanFast does not match original declaration [-Werror=lto-type-mismatch]
Summary: sci-biology/qrna-2.0.3c-r3 fails to compile: evolscorewithmodelscanfast.c:307...
Status: RESOLVED DUPLICATE of bug 862285
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks: lto
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Reported: 2024-03-21 09:21 UTC by Agostino Sarubbo
Modified: 2024-03-21 19:44 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---

Attachments
build.log (build.log,111.98 KB, text/plain)
2024-03-21 09:21 UTC, Agostino Sarubbo 		Details
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Description Agostino Sarubbo gentoo-dev 2024-03-21 09:21:16 UTC 
https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/

Issue: sci-biology/qrna-2.0.3c-r3 fails to compile.
Discovered on: amd64 (internal ref: lto_tinderbox)
System: LTO-SYSTEM (https://wiki.gentoo.org/wiki/Project:Tinderbox/Common_Issues_Helper#LTO)

Info about the issue:
https://wiki.gentoo.org/wiki/Project:Tinderbox/Common_Issues_Helper#CF0014
Comment 1 Agostino Sarubbo gentoo-dev 2024-03-21 09:21:17 UTC 
Created attachment 888032 [details]
build.log

build log and emerge --info
Comment 2 Agostino Sarubbo gentoo-dev 2024-03-21 09:21:19 UTC 
Error(s) that match a know pattern in addition to what has been reported in the summary:


  127 |   printf("MAX_average error[L=%d] = %.2f %
  128 |   printf("ACT_average error[@t %.3f] = %.2f %
  177 |   printf("average error[@t %.3f] = %.2f %
  235 |   printf("average error[@t %.3f] = %.2f %
 1191 |   printf("average RIBO error[@t %.3f] = %.2f %
 1301 |   printf("Predicted_average L-error[L=%d] = %.2f %
 1302 |   printf("ACTUAL_average L-error[@t %.3f] = %.2f %
 1304 |   printf("Predicted_average R-error[L=%d] = %.2f %
 1305 |   printf("ACTUAL_average R-error[@t %.3f] = %.2f %
 1364 |   printf("average RIBO5 error[@t %.3f] = %.2f %
", L, max_error);
", L, predic_lerror);
", L, predic_rerror);
", pairprob->time, actual_lerror);
", pairprob->time, actual_rerror);
", pmut5xy->time, error);
", pmutxy->time, error);
", ribo5prob->time, error);
", riboprob->time, error);
", tfactor, act_error);
../src/evolscorewithmodelscanfast.c:307:15: error: type of ‘EvolViterbiRNADiagScanFast’ does not match original declaration [-Werror=lto-type-mismatch[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wlto-type-mismatch]]
Comment 3 Eli Schwartz gentoo-dev 2024-03-21 19:44:56 UTC 
Reported after bug 862285 was closed by a commit which the tinderbox had not advanced to. Duplicate checking apparently failed.

*** This bug has been marked as a duplicate of bug 862285 ***