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Bug 919165 - sys-devel/gcc-14: ICE when building sci-biology/clustal-omega-1.2.4-r1 (hhhitlist-C.h: internal compiler error: in check_loop_closed_ssa_def, at tree-ssa-loop-manip.cc:647)
Summary: sys-devel/gcc-14: ICE when building sci-biology/clustal-omega-1.2.4-r1 (hhhit...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Gentoo Toolchain Maintainers
URL:
Whiteboard: fixed in 14.0.0_pre20231210
Keywords:
Depends on:
Blocks: gcc-14
  Show dependency tree
 
Reported: 2023-12-04 17:37 UTC by Toralf Förster
Modified: 2024-11-01 18:49 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---

Attachments
emerge-info.txt (emerge-info.txt,21.48 KB, text/plain)
2023-12-04 17:37 UTC, Toralf Förster 		Details
emerge-history.txt.xz (emerge-history.txt.xz,84.62 KB, application/x-xz)
2023-12-04 17:37 UTC, Toralf Förster 		Details
environment (environment,75.54 KB, text/plain)
2023-12-04 17:37 UTC, Toralf Förster 		Details
etc.clang.tar.xz (etc.clang.tar.xz,1.14 KB, application/x-xz)
2023-12-04 17:37 UTC, Toralf Förster 		Details
etc.portage.tar.xz (etc.portage.tar.xz,25.47 KB, application/x-xz)
2023-12-04 17:37 UTC, Toralf Förster 		Details
logs.tar.xz (logs.tar.xz,10.43 KB, application/x-xz)
2023-12-04 17:37 UTC, Toralf Förster 		Details
qlist-info.txt.xz (qlist-info.txt.xz,93.82 KB, application/x-xz)
2023-12-04 17:37 UTC, Toralf Förster 		Details
sci-biology:clustal-omega-1.2.4-r1:20231204-110826.log (sci-biology:clustal-omega-1.2.4-r1:20231204-110826.log,14.69 KB, text/plain)
2023-12-04 17:37 UTC, Toralf Förster 		Details
temp.tar.xz (temp.tar.xz,23.06 KB, application/x-xz)
2023-12-04 17:38 UTC, Toralf Förster 		Details
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Description Toralf Förster gentoo-dev 2023-12-04 17:37:51 UTC 
hhhmm-C.h:1734:17: note: at offset [-2147483648, -1] into destination object 'iis' of size [0, 2147483647]
 1734 |   unsigned char iis[par.maxResLen]; // inside-integer array
      |                 ^~~
during GIMPLE pass: ch_vect
In file included from hhalign.cpp:75:
hhhitlist-C.h: In member function 'void HitList::SVD(double**, int, double*, double**)':
hhhitlist-C.h:2919:1: internal compiler error: in check_loop_closed_ssa_def, at tree-ssa-loop-manip.cc:647
 2919 | HitList::SVD(double **A, int n, double w[], double **V)
      | ^~~~~~~

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_desktop_gnome_systemd-20231123-170505

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-10
 [2] x86_64-pc-linux-gnu-14 *
clang/llvm (if any):
clang version 17.0.6
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/17/bin
Configuration file: /etc/clang/x86_64-pc-linux-gnu-clang.cfg
/usr/lib/llvm/17
17.0.6
Python 3.11.6
Available Ruby profiles:
  [1]   ruby31 (with Rubygems) *
Available Rust versions:
  [1]   rust-bin-1.73.0 *
The following VMs are available for generation-2:
1)	Eclipse Temurin JDK 17.0.8.1_p1 [openjdk-bin-17]
*)	Eclipse Temurin JDK 21.0.1_p12 [openjdk-bin-21]
3)	Eclipse Temurin JDK 8.382_p05 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-bin-8 
  [2]   openjdk-bin-17 
  [3]   openjdk-bin-21  system-vm

The Glorious Glasgow Haskell Compilation System, version 9.2.8
php cli (if any):
go version go1.21.4 linux/amd64

  HEAD of ::gentoo
commit b687e2440864a22175d21e3b0a5975021b81078a
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Mon Dec 4 11:02:01 2023 +0000

    2023-12-04 11:02:00 UTC

emerge -qpvO sci-biology/clustal-omega
[ebuild  N    ] sci-biology/clustal-omega-1.2.4-r1
Comment 1 Toralf Förster gentoo-dev 2023-12-04 17:37:52 UTC 
Created attachment 876647 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2023-12-04 17:37:53 UTC 
Created attachment 876648 [details]
emerge-history.txt.xz
Comment 3 Toralf Förster gentoo-dev 2023-12-04 17:37:54 UTC 
Created attachment 876649 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2023-12-04 17:37:55 UTC 
Created attachment 876650 [details]
etc.clang.tar.xz
Comment 5 Toralf Förster gentoo-dev 2023-12-04 17:37:56 UTC 
Created attachment 876651 [details]
etc.portage.tar.xz
Comment 6 Toralf Förster gentoo-dev 2023-12-04 17:37:57 UTC 
Created attachment 876652 [details]
logs.tar.xz
Comment 7 Toralf Förster gentoo-dev 2023-12-04 17:37:58 UTC 
Created attachment 876653 [details]
qlist-info.txt.xz
Comment 8 Toralf Förster gentoo-dev 2023-12-04 17:37:59 UTC 
Created attachment 876654 [details]
sci-biology:clustal-omega-1.2.4-r1:20231204-110826.log
Comment 9 Toralf Förster gentoo-dev 2023-12-04 17:38:00 UTC 
Created attachment 876655 [details]
temp.tar.xz
Comment 10 Sam James archtester Gentoo Infrastructure gentoo-dev Security 2023-12-05 06:38:07 UTC 
Reported upstream at https://gcc.gnu.org/bugzilla/show_bug.cgi?id=112856, thanks!
Comment 11 Larry the Git Cow gentoo-dev 2023-12-10 22:45:26 UTC 
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e236580ec04454ac3b7183dd0a62f2b908773282

commit e236580ec04454ac3b7183dd0a62f2b908773282
Author:     Sam James <sam@gentoo.org>
AuthorDate: 2023-12-10 22:44:42 +0000
Commit:     Sam James <sam@gentoo.org>
CommitDate: 2023-12-10 22:44:42 +0000

    sys-devel/gcc: add 14.0.0_pre20231210
    
    Closes: https://bugs.gentoo.org/919165
    Closes: https://bugs.gentoo.org/918991
    Signed-off-by: Sam James <sam@gentoo.org>

 sys-devel/gcc/Manifest                      |  2 +
 sys-devel/gcc/gcc-14.0.0_pre20231210.ebuild | 64 +++++++++++++++++++++++++++++
 2 files changed, 66 insertions(+)