FAILED xarray/tests/test_coding_times.py::test_roundtrip_datetime64_nanosecond_precision[1677-09-21T00:12:43.145224193-ns-int64-20-True] FAILED xarray/tests/test_coding_times.py::test_roundtrip_datetime64_nanosecond_precision[1970-09-21T00:12:44.145224808-ns-float64-1e+30-True] FAILED xarray/tests/test_coding_times.py::test_roundtrip_datetime64_nanosecond_precision[1677-09-21T00:12:43.145225216-ns-float64--9.223372036854776e+18-True] FAILED xarray/tests/test_coding_times.py::test_roundtrip_datetime64_nanosecond_precision[1677-09-21T00:12:43.145224193-ns-int64-None-False] FAILED xarray/tests/test_coding_times.py::test_roundtrip_datetime64_nanosecond_precision[1677-09-21T00:12:43.145225-us-int64-None-False] FAILED xarray/tests/test_coding_times.py::test_roundtrip_datetime64_nanosecond_precision[1970-01-01T00:00:01.000001-us-int64-None-False] FAILED xarray/tests/test_coding_times.py::test_roundtrip_datetime64_nanosecond_precision[1677-09-21T00:21:52.901038080-ns-float32-20.0-True] FAILED xarray/tests/test_missing.py::test_interpolate_na_2d[coords1] - Module... = 8 failed, 5301 passed, 6105 skipped, 10 xfailed, 58 warnings in 681.75s (0:11:21) = * ERROR: dev-python/xarray-2023.10.1-r1::gentoo failed (test phase): * pytest failed with python3.11 ---- # emerge --info Portage 3.0.51 (python 3.11.5-final-0, default/linux/hppa/17.0/systemd, gcc-13, glibc-2.38-r1, 6.4.10 parisc64) ================================================================= System uname: Linux-6.4.10-parisc64-PA8800_-Mako-with-glibc2.38 KiB Mem: 8206292 total, 803796 free KiB Swap: 1120380 total, 1120380 free Timestamp of repository gentoo: Sat, 28 Oct 2023 23:01:58 +0000 sh dash 0.5.12 ld GNU ld (Gentoo 2.41 p2) 2.41.0 app-misc/pax-utils: 1.3.7::gentoo app-shells/bash: 5.2_p15-r6::gentoo dev-lang/perl: 5.38.0-r1::gentoo dev-lang/python: 3.11.5::gentoo, 3.12.0_rc2_p1-r1::gentoo dev-util/cmake: 3.27.5::gentoo dev-util/meson: 1.2.1-r1::gentoo sys-apps/baselayout: 2.14::gentoo sys-apps/sandbox: 2.38::gentoo sys-apps/systemd: 254.3::gentoo sys-devel/autoconf: 2.71-r7::gentoo sys-devel/automake: 1.16.5-r1::gentoo sys-devel/binutils: 2.41-r1::gentoo sys-devel/binutils-config: 5.5::gentoo sys-devel/gcc: 13.2.1_p20230826::gentoo sys-devel/gcc-config: 2.11::gentoo sys-devel/libtool: 2.4.7-r1::gentoo sys-devel/make: 4.4.1-r1::gentoo sys-kernel/linux-headers: 6.5::gentoo (virtual/os-headers) sys-libs/glibc: 2.38-r1::gentoo Repositories: gentoo location: /var/db/repos/gentoo sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 volatile: False sync-rsync-verify-jobs: 1 sync-rsync-extra-opts: sync-rsync-verify-max-age: 24 sync-rsync-verify-metamanifest: yes ACCEPT_KEYWORDS="hppa ~hppa" ACCEPT_LICENSE="*" CBUILD="hppa2.0-unknown-linux-gnu" CFLAGS="-O2 -pipe -march=2.0" CHOST="hppa2.0-unknown-linux-gnu" CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" CXXFLAGS="-O2 -pipe -march=2.0" DISTDIR="/var/cache/distfiles" EMERGE_DEFAULT_OPTS="--nospinner --ask-enter-invalid --quiet-build --keep-going --complete-graph --with-bdeps=y --usepkg=y --deep" ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME" FCFLAGS="-O2 -pipe -march=2.0" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg-live clean-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox pkgdir-index-trusted preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms split-elog split-log strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe -march=2.0" GENTOO_MIRRORS="http://distfiles.gentoo.org" LANG="C.UTF8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" LEX="flex" MAKEOPTS="-j2 -l2" PKGDIR="/var/cache/binpkgs" PORTAGE_COMPRESS="xz" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" SHELL="/bin/bash" USE="acl big-endian bzip2 cli crypt fortran gdbm hppa iconv ipv6 ncurses nls nptl openmp pam pcre readline seccomp split-usr ssl systemd udev unicode xattr zlib" ADA_TARGET="gnat_2021" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php8-1" POSTGRES_TARGETS="postgres15" PYTHON_SINGLE_TARGET="python3_11" PYTHON_TARGETS="python3_11" RUBY_TARGETS="ruby31 ruby32" VIDEO_CARDS="fbdev dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS
Created attachment 873627 [details] build.log.xz
var = Variable(["time"], times, encoding=encoding) > assert var.dtype == np.dtype("<M8[ns]") E AssertionError: assert dtype('>M8[ns]') == dtype('<M8[ns]') E + where dtype('>M8[ns]') = <xarray.Variable (time: 3)>\narray(['1970-01-01T00:00:00.000000000', 'NaT',\n '1677-09-21T00:12:43.145224193'], dtype='datetime64[ns]').dtype E + and dtype('<M8[ns]') = <class 'numpy.dtype'>('<M8[ns]') E + where <class 'numpy.dtype'> = np.dtype
If it's the same thing as in https://github.com/pandas-dev/pandas/issues/51041, it's not ideal, but it's not critically broken either.
I'll try 2023.8.0 and see what that has.
(In reply to Sam James from comment #4) > I'll try 2023.8.0 and see what that has. FAILED xarray/tests/test_missing.py::test_interpolate_na_2d[coords1] - ModuleNotFoundError: No module named 'scipy' FAILED xarray/tests/test_plot.py::TestPlot::test2d_nonuniform_calls_contourf - assert False FAILED xarray/tests/test_plot.py::TestContourf::test_contourf_called - AssertionError: assert False
hm, maybe this got introduced by https://github.com/pydata/xarray/commit/a4f80b23d32e9c3986e3342182fe382d8081c3c2, which would then make it susceptible to the numpy bug/quirk/feature linked?
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=214b26e564b13c56363258163cda0c16173b3636 commit 214b26e564b13c56363258163cda0c16173b3636 Author: Sam James <sam@gentoo.org> AuthorDate: 2023-10-29 03:33:02 +0000 Commit: Sam James <sam@gentoo.org> CommitDate: 2023-10-29 03:33:02 +0000 dev-python/xarray: skip tests caused by numpy quirk/bug See bug for details, it looks like it's a numpy quirk/feature/misfeature...? Closes: https://bugs.gentoo.org/916460 Signed-off-by: Sam James <sam@gentoo.org> dev-python/xarray/xarray-2023.10.1-r1.ebuild | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+)
