too long lines were shrinked: [15/18] /usr/bin/x86_64-pc-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_DATE_TIME_DYN_LINK -DBOOST_DATE_TIME_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_L [16/18] /usr/bin/x86_64-pc-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_DATE_TIME_DYN_LINK -DBOOST_DATE_TIME_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_L [17/18] /usr/bin/x86_64-pc-linux-gnu-g++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_DATE_TIME_DYN_LINK -DBOOST_DATE_TIME_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_L [18/18] : && /usr/bin/x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -fno-diagnostics-color -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,--defsym=__gentoo_check_ldflags__=0 -rdynamic src/CMakeFiles/express.dir/biascorrection.cpp.o src/CMakeFiles/express.dir/bundles.cpp.o src/CMakeFile FAILED: src/express : && /usr/bin/x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -fno-diagnostics-color -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,--defsym=__gentoo_check_ldflags__=0 -rdynamic src/CMakeFiles/express.dir/biascorrection.cpp.o src/CMakeFiles/express.dir/bundles.cpp.o src/CMakeFiles/expres /usr/libexec/gcc/x86_64-pc-linux-gnu/ld: src/CMakeFiles/express.dir/alignments.pb.cc.o: undefined reference to symbol '_ZN4absl12lts_2023012512log_internal17MakeCheckOpStringIllEEPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEET_T0_PKc' /usr/libexec/gcc/x86_64-pc-linux-gnu/ld: /usr/lib/gcc/x86_64-pc-linux-gnu/13/../../../../lib64/libabsl_log_internal_check_op.so.2301.0.0: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 23.0_desktop_plasma_systemd-20230815-172509 ------------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-10 [2] x86_64-pc-linux-gnu-13 * clang/llvm (if any): clang version 16.0.6 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/lib/llvm/16/bin Configuration file: /etc/clang/clang.cfg /usr/lib/llvm/16 16.0.6 Python 3.11.4 Available Ruby profiles: [1] ruby31 (with Rubygems) * Available Rust versions: [1] rust-bin-1.71.1 [2] rust-1.71.1 * The following VMs are available for generation-2: 1) Eclipse Temurin JDK 11.0.19_p7 [openjdk-bin-11] *) Eclipse Temurin JDK 17.0.7_p7 [openjdk-bin-17] 3) Eclipse Temurin JDK 8.372_p07 [openjdk-bin-8] Available Java Virtual Machines: [1] openjdk-bin-8 [2] openjdk-bin-11 [3] openjdk-bin-17 system-vm php cli (if any): go version go1.21.0 linux/amd64 HEAD of ::gentoo commit 497cff62bb234e8643d4d71f8779807a63fffcc2 Author: Repository mirror & CI <repomirrorci@gentoo.org> Date: Tue Aug 22 01:01:44 2023 +0000 2023-08-22 01:01:43 UTC emerge -qpvO sci-biology/express [ebuild N ] sci-biology/express-1.5.1
Created attachment 868471 [details] emerge-info.txt
Created attachment 868472 [details] emerge-history.txt.xz
Created attachment 868473 [details] environment
Created attachment 868474 [details] etc.clang.tar.xz
Created attachment 868475 [details] etc.portage.tar.xz
Created attachment 868476 [details] sci-biology:express-1.5.1:20230822-015010.log
Created attachment 868477 [details] temp.tar.xz
The bug has been referenced in the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=b968d51b8a468d7a264d0b795813b4f0b8e15152 commit b968d51b8a468d7a264d0b795813b4f0b8e15152 Author: Sam James <sam@gentoo.org> AuthorDate: 2023-08-29 05:34:54 +0000 Commit: Sam James <sam@gentoo.org> CommitDate: 2023-08-29 05:34:54 +0000 package.mask: Last rite sci-biology/express Bug: https://bugs.gentoo.org/912828 Signed-off-by: Sam James <sam@gentoo.org> profiles/package.mask | 6 ++++++ 1 file changed, 6 insertions(+)
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=9dd02118b6f0149e41c814e40876e45481112148 commit 9dd02118b6f0149e41c814e40876e45481112148 Author: Florian Schmaus <flow@gentoo.org> AuthorDate: 2023-10-02 11:29:13 +0000 Commit: Florian Schmaus <flow@gentoo.org> CommitDate: 2023-10-02 11:36:49 +0000 sci-biology/express: treeclean Closes: https://bugs.gentoo.org/912828 Signed-off-by: Florian Schmaus <flow@gentoo.org> profiles/package.mask | 6 --- sci-biology/express/Manifest | 1 - sci-biology/express/express-1.5.1.ebuild | 38 --------------- .../express/files/express-1.5.1-buildsystem.patch | 55 ---------------------- sci-biology/express/files/express-1.5.1-gcc6.patch | 19 -------- sci-biology/express/metadata.xml | 8 ---- 6 files changed, 127 deletions(-)
