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Bug 912651 - dev-db/mysql-8.0.32-r2 failed to rebuild after system update
Summary: dev-db/mysql-8.0.32-r2 failed to rebuild after system update
Status: RESOLVED INVALID
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Gentoo Linux bug wranglers
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2023-08-20 05:41 UTC by Leonid Kopylov
Modified: 2023-08-20 05:49 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (build.log,876.35 KB, text/plain)
2023-08-20 05:41 UTC, Leonid Kopylov
Details

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Description Leonid Kopylov 2023-08-20 05:41:33 UTC
# emerge -pqv '=dev-db/mysql-8.0.32-r2::gentoo'
[ebuild   R   ] dev-db/mysql-8.0.32-r2  USE="cracklib jemalloc perl router server -cjk -debug -latin1 -numa -profiling (-selinux) -tcmalloc -test"

# emerge --info '=dev-db/mysql-8.0.32-r2::gentoo'
Portage 3.0.50 (python 3.12.0-candidate-1, default/linux/amd64/17.1/desktop/gnome/systemd/merged-usr, gcc-13, glibc-2.37-r4, 6.4.11-gentoo-amd64 x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-6.4.11-gentoo-amd64-x86_64-12th_Gen_Intel-R-_Core-TM-_i7-1260P-with-glibc2.37
KiB Mem:    65423460 total,  51436108 free
KiB Swap:    8388604 total,   8388604 free
Timestamp of repository gentoo: Sun, 20 Aug 2023 03:30:01 +0000
Head commit of repository gentoo: d942d80aeec6b5ff05c5cdc944f123175bf8e2ca
Timestamp of repository EmilienMottet: Sat, 19 Aug 2023 18:32:28 +0000
Head commit of repository EmilienMottet: ebb2e3aabf1b2fabc6b076799ba29b7be5725656

Timestamp of repository HomeAssistantRepository: Sat, 19 Aug 2023 18:32:35 +0000
Head commit of repository HomeAssistantRepository: 063e3f9e370ce07d6c2205010009b8168c6f300f

Timestamp of repository brave-overlay: Fri, 18 Aug 2023 01:47:59 +0000
Head commit of repository brave-overlay: 850542054d34040a5dab0bce04f993cb69608dc6

Timestamp of repository darkelf: Fri, 18 Aug 2023 01:47:57 +0000
Head commit of repository darkelf: e01669b7686863a90df836af0951eec7c467d19c

Timestamp of repository guru: Sat, 19 Aug 2023 18:32:20 +0000
Head commit of repository guru: c8da2b820608c914a4383e9361c4e4ddc1b35231

Timestamp of repository inode64-overlay: Sat, 19 Aug 2023 18:32:28 +0000
Head commit of repository inode64-overlay: b90767f385d5575f87fd0c945fc2dd29e93ed8d9

Timestamp of repository kde: Sat, 19 Aug 2023 18:32:18 +0000
Head commit of repository kde: 31823b91770eb61b873abe33707cdf7e526df553

Timestamp of repository pentoo: Sat, 19 Aug 2023 22:01:42 +0000
Head commit of repository pentoo: 48b077ea0932424f4cb2b28de17dcae90eaab117

sh bash 5.2_p15-r6
ld GNU ld (Gentoo 2.41 p2) 2.41.0
ccache version 4.8.2 [enabled]
app-misc/pax-utils:        1.3.7::gentoo
app-shells/bash:           5.2_p15-r6::gentoo
dev-java/java-config:      2.3.1-r1::gentoo
dev-lang/perl:             5.38.0-r1::gentoo
dev-lang/python:           3.10.12::gentoo, 3.11.4::gentoo, 3.12.0_rc1_p3::gentoo
dev-lang/rust:             1.71.1::gentoo
dev-util/ccache:           4.8.2::gentoo
dev-util/cmake:            3.27.3-r1::gentoo
dev-util/meson:            1.2.1-r1::gentoo
sys-apps/baselayout:       2.14::gentoo
sys-apps/sandbox:          2.38::gentoo
sys-apps/systemd:          254.1-r1::gentoo
sys-devel/autoconf:        2.13-r8::gentoo, 2.71-r7::gentoo
sys-devel/automake:        1.16.5-r1::gentoo
sys-devel/binutils:        2.41-r1::gentoo
sys-devel/binutils-config: 5.5::gentoo
sys-devel/clang:           15.0.7-r3::gentoo, 16.0.6::gentoo
sys-devel/gcc:             12.3.1_p20230623::gentoo, 13.2.0::gentoo
sys-devel/gcc-config:      2.11::gentoo
sys-devel/libtool:         2.4.7-r1::gentoo
sys-devel/lld:             15.0.7::gentoo, 16.0.6::gentoo
sys-devel/llvm:            14.0.6-r4::gentoo, 15.0.7-r3::gentoo, 16.0.6::gentoo
sys-devel/make:            4.4.1-r1::gentoo
sys-kernel/linux-headers:  6.4::gentoo (virtual/os-headers)
sys-libs/glibc:            2.37-r4::gentoo
Repositories:

gentoo
    location: /var/db/repos/gentoo
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    volatile: False
    sync-rsync-verify-max-age: 24
    sync-rsync-verify-jobs: 1
    sync-rsync-verify-metamanifest: yes
    sync-rsync-extra-opts:

EmilienMottet
    location: /var/db/repos/EmilienMottet
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/EmilienMottet.git
    masters: gentoo
    volatile: False

HomeAssistantRepository
    location: /var/db/repos/HomeAssistantRepository
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/HomeAssistantRepository.git
    masters: gentoo
    volatile: False

brave-overlay
    location: /var/db/repos/brave-overlay
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/brave-overlay.git
    masters: gentoo
    volatile: False

darkelf
    location: /var/db/repos/darkelf
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/darkelf.git
    masters: gentoo
    volatile: False

guru
    location: /var/db/repos/guru
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/guru.git
    masters: gentoo
    volatile: False

inode64-overlay
    location: /var/db/repos/inode64-overlay
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/inode64-overlay.git
    masters: gentoo
    volatile: False

kde
    location: /var/db/repos/kde
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/kde.git
    masters: gentoo
    volatile: False

pentoo
    location: /var/db/repos/pentoo
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/pentoo.git
    masters: gentoo
    volatile: False

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* -@EULA android AnyDesk-TOS geekbench google-chrome Intel-SDP microsoft-edge Microsoft-vscode OPERA-2018 PUEL-11 RAR TeamViewer Vivaldi"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe -fomit-frame-pointer"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /opt/sonar/conf /opt/zookeeper-bin/conf /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt /var/bind"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php8.1/ext-active/ /etc/php/apache2-php8.2/ext-active/ /etc/php/cgi-php8.1/ext-active/ /etc/php/cgi-php8.2/ext-active/ /etc/php/cli-php8.1/ext-active/ /etc/php/cli-php8.2/ext-active/ /etc/php/fpm-php8.1/ext-active/ /etc/php/fpm-php8.2/ext-active/ /etc/php/phpdbg-php8.1/ext-active/ /etc/php/phpdbg-php8.2/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=native -O2 -pipe -fomit-frame-pointer"
DISTDIR="/var/cache/distfiles"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME"
FCFLAGS="-march=native -O2 -pipe -fomit-frame-pointer"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg-live ccache config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict strict-keepdir unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync warn-on-large-env xattr"
FFLAGS="-march=native -O2 -pipe -fomit-frame-pointer"
GENTOO_MIRRORS="https://mirror.isoc.org.il/pub/gentoo/ https://mirror.eu.oneandone.net/linux/distributions/gentoo/gentoo/"
LANG="en_US.utf8"
LC_ALL="en_US.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LEX="flex"
MAKEOPTS="-j10"
PKGDIR="/var/cache/binpkgs"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
SHELL="/bin/bash"
USE="X a52 aac accessibility acl acpi alsa amd64 audit bash-completion berkdb bidi bluetooth branding brotli btrfs bzip2 cairo cdda cdr cgi cli colord crypt cryptsetup cups curl dbus designer device-mapper doc dri drm dts dvd dvdr eds emacs encode evdev evo examples exif experimental ffmpeg flac fortran fuse gamepad gdbm gif git gmp gnome gnome-keyring gnome-online-accounts gnutls go gpg gpm gstreamer gtk gtk-doc gui heif hscolour html http ibus iconv icu idn introspection iodbc ios ipv6 jack java jemalloc joystick jpeg json kde kerberos keyring lcms ldap libnotify libtirpc lm-sensors lua lvm lz4 lzma lzo mad man mbedtls mng mongodb mp3 mp4 mpeg mpi multilib multimedia mysql nas nautilus ncurses netlink network networkmanager nfs nls nptl nss odbc offensive ogg opencl opengl openmp openssl pam pango pcap pcre pdf perl pkcs11 plasma plugins png policykit postgres ppds pulseaudio python qml qt5 qt6 readline redis samba sasl screencast sdl seccomp semantic-desktop snmp sound source speech spell sqlite ssl startup-notification svg symlink sysprof systemd tcl tcpd telemetry test-rust threads tiff tk tools tpm tracker truetype udev udisks unicode unwind upnp upower usb utils v4l vaapi vala vim-syntax vnc vorbis vulkan wayland webengine webkit webp wifi wxwidgets x264 xattr xcb xft xinerama xml xv xvid yaml zeroconf zip zlib zstd" ABI_X86="64 32" ADA_TARGET="gnat_2021" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets stage words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx avx2 f16c fma3 mmx mmxext pclmul popcnt rdrand sha sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="efi-64" INPUT_DEVICES="evdev joystick libinput" KERNEL="linux" L10N="en en-US he ru" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="nlpsolver scripting-beanshell scripting-javascript wiki-publisher" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php8-1" POSTGRES_TARGETS="postgres15" PYTHON_SINGLE_TARGET="python3_11" PYTHON_TARGETS="python3_11 python3_10 python3_12" RUBY_TARGETS="ruby31 ruby32" VIDEO_CARDS="intel fbdev vesa" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EMERGE_DEFAULT_OPTS, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LD, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS

=================================================================
                        Package Settings
=================================================================

dev-db/mysql-8.0.32-r2::gentoo was built with the following:
USE="cracklib jemalloc perl router server -cjk -debug -latin1 -numa -profiling (-selinux) -tcmalloc -test" ABI_X86="(64)"
CXXFLAGS="-march=native -O2 -pipe -fomit-frame-pointer -std=c++17"
FEATURES="merge-sync assume-digests userfetch strict pid-sandbox userpriv qa-unresolved-soname-deps unmerge-orphans multilib-strict buildpkg-live binpkg-docompress protect-owned preserve-libs distlocks usersandbox warn-on-large-env config-protect-if-modified parallel-fetch news sandbox sfperms binpkg-multi-instance binpkg-logs ebuild-locks unmerge-logs usersync network-sandbox ipc-sandbox fixlafiles binpkg-dostrip strict-keepdir xattr unknown-features-warn"
Comment 1 Leonid Kopylov 2023-08-20 05:41:45 UTC
Created attachment 868236 [details]
build.log
Comment 2 Sam James archtester Gentoo Infrastructure gentoo-dev Security 2023-08-20 05:48:02 UTC
ld.lld: [0;31merror: [0mundefined reference due to --no-allow-shlib-undefined: std::ios_base_library_init()@GLIBCXX_3.4.32
>>> referenced by /usr/lib64/libicuio.so

This looks like you built ICU with GCC 13 and then you tried to build MySQL with GCC 12.
Comment 3 Leonid Kopylov 2023-08-20 05:49:24 UTC
(In reply to Sam James from comment #2)
> ld.lld: [0;31merror: [0mundefined reference due to
> --no-allow-shlib-undefined: std::ios_base_library_init()@GLIBCXX_3.4.32
> >>> referenced by /usr/lib64/libicuio.so
> 
> This looks like you built ICU with GCC 13 and then you tried to build MySQL
> with GCC 12.

because of this: https://bugs.gentoo.org/905209 i build mysql with gcc 12, maybe at some point icu was rebuilt, will try to rebuild icu with gcc 12