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Bug 910015 - sci-biology/HTSeq: needs to use PEP517 build (DistutilsNonPEP517Build)
Summary: sci-biology/HTSeq: needs to use PEP517 build (DistutilsNonPEP517Build)
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All All
: Normal normal (vote)
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords: PMASKED
Depends on:
Blocks: pep517-porting
  Show dependency tree
 
Reported: 2023-07-08 06:58 UTC by Michał Górny
Modified: 2024-04-27 15:01 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


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Description Michał Górny archtester Gentoo Infrastructure gentoo-dev Security 2023-07-08 06:58:04 UTC
This package still uses the legacy eclass code paths.  These paths are deprecated and pose a significant maintenance cost.  Please update the package to use PEP517 build mode.  For more information, please see the Python Guide, particularly; https://projects.gentoo.org/python/guide/migration.html#migrating-to-pep-517-builds
Comment 1 Sam James archtester Gentoo Infrastructure gentoo-dev Security 2023-07-08 20:40:50 UTC
[Adding this comment en-masse, sorry for the noise, but it's important.)

1. Please take particular care to check file diffs before/after, possibly using `iwdevtools`. Keep a particular eye out for e.g. config files now missing from /etc and instead being in /usr/lib/python*/site-packages, etc.

2. Please make sure to do the migration in a new revision in ~arch, partly because of 1.
Comment 2 Michał Górny archtester Gentoo Infrastructure gentoo-dev Security 2024-03-06 15:30:20 UTC
Final ping.  Please note that we will not hesitate to last rite low profile packages over this.
Comment 3 Michał Górny archtester Gentoo Infrastructure gentoo-dev Security 2024-03-22 16:40:29 UTC
This one's high on last rite list because of distutils_install_for_testing use.
Comment 4 Larry the Git Cow gentoo-dev 2024-03-26 14:21:30 UTC
The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3e979e7047bdadfc36d9350b3a79f6d0471de970

commit 3e979e7047bdadfc36d9350b3a79f6d0471de970
Author:     Michał Górny <mgorny@gentoo.org>
AuthorDate: 2024-03-26 14:13:43 +0000
Commit:     Michał Górny <mgorny@gentoo.org>
CommitDate: 2024-03-26 14:21:21 +0000

    package.mask: Last rite sci-biology/HTSeq
    
    Bug: https://bugs.gentoo.org/910015
    Signed-off-by: Michał Górny <mgorny@gentoo.org>

 profiles/package.mask | 6 ++++++
 1 file changed, 6 insertions(+)
Comment 5 Larry the Git Cow gentoo-dev 2024-04-27 15:01:47 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=4e76e5b45022d702af9a61fd2d65787b222b6d40

commit 4e76e5b45022d702af9a61fd2d65787b222b6d40
Author:     Arthur Zamarin <arthurzam@gentoo.org>
AuthorDate: 2024-04-27 14:59:46 +0000
Commit:     Arthur Zamarin <arthurzam@gentoo.org>
CommitDate: 2024-04-27 14:59:46 +0000

    sci-biology/HTSeq: treeclean
    
    Closes: https://bugs.gentoo.org/910015
    Bug: https://bugs.gentoo.org/923242
    Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>

 profiles/package.mask                |  6 ----
 sci-biology/HTSeq/HTSeq-2.0.2.ebuild | 66 ------------------------------------
 sci-biology/HTSeq/HTSeq-9999.ebuild  | 66 ------------------------------------
 sci-biology/HTSeq/Manifest           |  1 -
 sci-biology/HTSeq/metadata.xml       | 12 -------
 5 files changed, 151 deletions(-)