After updating to sys-apps/portage-3.0.44 on two systems , I am getting multiple errors relating to script commands failing such as: "/usr/bin/env: bash: No such file or directory" "/usr/bin/env: ‘bash’: Permission denied" "The ebuild phase 'die_hooks' has been aborted since PORTAGE_BUILDDIR does not exist: '/var/tmp/portage/net-misc/iputils-20221126'" Reproducible: Always Steps to Reproduce: 1. Upgrade to sys-apps/portage-3.0.44 2. Try installing any package 3. It fails
Please share the full build.log and emerge --info.
It's as though the PATH environment has been removed as emerge -avK --nodeps portage to rollback to the previous version results in "bash: line 1: bzip2: command not found" Here is my emerge --info: Portage 3.0.44 (python 3.10.9-final-0, default/linux/amd64/17.0/desktop/plasma, gcc-11.2.1, glibc-2.34-r13, 5.15.49-gentoo x86_64) ================================================================= System uname: Linux-5.15.49-gentoo-x86_64-Intel-R-_Core-TM-_i7-8750H_CPU_@_2.20GHz-with-glibc2.34 KiB Mem: 32678928 total, 5643052 free KiB Swap: 37748732 total, 37747620 free Timestamp of repository gentoo: Mon, 20 Feb 2023 13:45:01 +0000 Head commit of repository gentoo: 3646bf14c0cf778fc8fdedc264b76733866e85d5 Head commit of repository dlang: dac285655e25575e240713ed11795e9b60591827 sh bash 5.1_p8 ld GNU ld (Gentoo 2.36.1 p5) 2.36.1 ccache version 3.7.11 [disabled] app-misc/pax-utils: 1.3.3::gentoo app-shells/bash: 5.1_p8::gentoo dev-java/java-config: 2.3.1::gentoo dev-lang/perl: 5.26.2::gentoo dev-lang/python: 2.7.18_p15::gentoo, 3.1.2-r3::gentoo, 3.2.5-r2::gentoo, 3.3.2-r2::gentoo, 3.4.1::gentoo, 3.5.5::gentoo, 3.6.10-r1::gentoo, 3.7.8-r1::gentoo, 3.8.6-r1::gentoo, 3.9.16::gentoo, 3.10.9-r1::gentoo dev-lang/rust: 1.62.1::gentoo dev-util/ccache: 3.7.11::gentoo dev-util/cmake: 3.25.2::gentoo dev-util/meson: 0.62.2::gentoo sys-apps/baselayout: 2.1-r1::gentoo sys-apps/openrc: 0.13.11::gentoo sys-apps/sandbox: 2.29::gentoo sys-devel/autoconf: 2.13::gentoo, 2.69::gentoo, 2.71-r5::gentoo sys-devel/automake: 1.8.5-r4::gentoo, 1.9.6-r3::gentoo, 1.10.3::gentoo, 1.11.1::gentoo, 1.12.6::gentoo, 1.13.4-r2::gentoo, 1.14.1-r2::gentoo, 1.15.1-r2::gentoo, 1.16.5::gentoo sys-devel/binutils: 2.25.1-r1::gentoo, 2.28.1::gentoo, 2.30-r2::gentoo, 2.36.1-r2::gentoo sys-devel/binutils-config: 5-r2::gentoo sys-devel/clang: 5.0.2::gentoo, 9.0.1::gentoo, 11.0.1::gentoo sys-devel/gcc: 4.4.5::gentoo, 4.5.3-r1::gentoo, 4.6.3::gentoo, 4.8.3::gentoo, 4.9.3::gentoo, 5.4.0-r3::gentoo, 7.3.0-r3::gentoo, 8.3.0-r1::gentoo, 9.3.0-r1::gentoo, 11.2.1_p20220115::gentoo sys-devel/gcc-config: 2.3.1::gentoo sys-devel/libtool: 2.4.7::gentoo sys-devel/llvm: 5.0.2::gentoo, 9.0.1::gentoo, 11.0.1::gentoo sys-devel/make: 4.2.1-r4::gentoo sys-kernel/linux-headers: 5.15-r3::gentoo (virtual/os-headers) sys-libs/glibc: 2.34-r13::gentoo Repositories: gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.risser.com.au/gentoo-portage priority: -1000 volatile: True sync-rsync-extra-opts: sync-rsync-verify-jobs: 1 sync-rsync-verify-metamanifest: yes sync-rsync-verify-max-age: 24 crossdev location: /usr/local/portage masters: gentoo dlang priority: 0 volatile: True dlang location: /var/lib/layman/dlang sync-type: git sync-uri: https://github.com/gentoo-mirror/dlang.git masters: gentoo priority: 50 volatile: True ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="@FREE" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -march=haswell -fomit-frame-pointer -ftree-vectorize -fpredictive-commoning -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/maven-bin-2.2/conf /usr/share/maven-bin-3.0/conf /usr/share/themes/oxygen-gtk/gtk-2.0 /var/lib/hsqldb" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php7.1/ext-active/ /etc/php/apache2-php7.4/ext-active/ /etc/php/cgi-php7.1/ext-active/ /etc/php/cgi-php7.4/ext-active/ /etc/php/cli-php7.1/ext-active/ /etc/php/cli-php7.4/ext-active/ /etc/php/fpm-php7.4/ext-active/ /etc/php/phpdbg-php7.4/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O2 -march=haswell -fomit-frame-pointer -ftree-vectorize -fpredictive-commoning -pipe" DISTDIR="/usr/portage/distfiles" ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs buildpkg-live distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="https://mirror.aarnet.edu.au/pub/gentoo http://ftp.swin.edu.au/gentoo http://mirror.internode.on.net/pub/gentoo http://gentoo.osuosl.org" LANG="en_AU.utf8" LDFLAGS="-Wl,--as-needed" LINGUAS="en en_GB en_US en_AU zh_CN" MAKEOPTS="-j2" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" SHELL="/bin/bash" USE="X a52 aac acl acpi activities alsa amd64 apache2 arts avahi bluetooth branding bzip2 cairo caps cdda cdr cjk cli crypt cups dbus declarative divx4linux dlloader dri dts dv dvd dvdr elogind encode exif faac fam flac fortran gdbm gif gnome gnutls gpm gstreamer gtk gui guile hal howl htmlhandbook iconv icu ieee1394 ipv6 jikes joystick jpeg jpeg2k kde kdeenablefinal kdehiddenvisibility kwallet lcms ldap libglvnd libnotify libtirpc logrotate mad matroska mmx mng mp3 mp4 mpeg multilib nas ncurses net nls nptl odbc ogg openexr opengl openmp pam pango pcre pdf physfs plasma png policykit povray ppds pulseaudio qml qt5 readline samba scanner sdl seccomp semantic-desktop slp sound speex spell split-usr sse sse2 sse3 ssl ssse3 startup-notification svg test-rust tetex theora threads tiff truetype udev udisks unicode upower usb vorbis widgets wmf wxwidgets x264 xattr xcb xcomposite xft xinerama xml xml2 xscreensaver xv xvid zeroconf zlib" ABI_X86="64 32" ADA_TARGET="gnat_2021" ALSA_CARDS="intel8x0 intel8x0m via82xx usb-audio hda-intel" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_fcgi proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias cgid authn_core authz_core unixd socache_shmcb access_compat remoteip" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2 sse3 ssse3 avx fma3 sse4_1 sse4_2 aes" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="efi-64 pc qemu" INPUT_DEVICES="libinput" KERNEL="linux" L10N="en-GB en-US en-AU zh-CN" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-1" POSTGRES_TARGETS="postgres12 postgres13" PYTHON_SINGLE_TARGET="python3_10" PYTHON_TARGETS="python3_10" QEMU_SOFTMMU_TARGETS="i386 x86_64 aarch64 alpha arm m68k mips mips64 mips64el mipsel ppc ppc64 riscv32 riscv64 s390x sparc sparc64 avr" QEMU_USER_TARGETS="i386 x86_64 aarch64 aarch64 aarch64_be alpha arm armeb m68k mips mips64 mips64el mipsel mipsn32 mipsn32el ppc ppc64 ppc64abi32 ppc64le riscv32 riscv64 s390x sparc sparc32plus sparc64" RUBY_TARGETS="ruby27 ruby30" USERLAND="GNU" VIDEO_CARDS="fbdev nv v4l vesa nvidia nouveau intel radeon i915 i965 amdgpu" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EMERGE_DEFAULT_OPTS, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LEX, LFLAGS, LIBTOOL, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS There is no build log as the build environment can't find any tools.
Oh I should also mention I'm not seeing this bug in 3.0.43-r1, so it was something that was changed between 3.0.43-r1 and 3.0.44.
I have now isolated the problem to the following test in portage/package/ebuild/doebuild.py: if "PATH" in settings.configdict["env.d"]: settings.configdict["env"].pop("PATH", None) If I comment that out, I don't get "not found" errors". It does look like I have a few files in /etc/env.d/ that redefine PATH, although renaming /etc/env.d/ doesn't seem to help.
(In reply to Matthew Stapleton from comment #4) > I have now isolated the problem to the following test in > portage/package/ebuild/doebuild.py: > > if "PATH" in settings.configdict["env.d"]: > settings.configdict["env"].pop("PATH", None) > > If I comment that out, I don't get "not found" errors". It does look like I > have a few files in /etc/env.d/ that redefine PATH, although renaming > /etc/env.d/ doesn't seem to help. You'll need to run env-update && . /etc/profile after adjusting /etc/env.d.
Ah yes I just realised that. After doing that to reset the PATH back to default, emerge is working so something seems to be breaking the PATH merging. Normally my PATH is set to "/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/bin:/usr/lib/llvm/5/bin:/usr/lib/llvm/11/bin:/usr/lib/llvm/9/bin:/opt/nvidia-cg-toolkit/bin:/opt/vmware/server/console/bin:/opt/cuda/bin" . On the other computer where I initially had the problem, its path is set to "/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/bin"
It looks like this is because I am still using an old version of baselayout as I see on newer Gentoo installations , baselayout defines PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/bin" , but older versions of baselayout defined PATH="/opt/bin" . After updating to the newer PATH definition, portage is working again. I guess this bug can probably be closed as the older baselayout's aren't in the portage tree anymore. Sorry for the noise.
It's definitely valid in that Portage (or @system) should be depending on a newer baselayout.
/usr/bin has been defined in PATH since baselayout-2.4, which was released in 2017. I am very curious how you still have a working Gentoo system with baselayout that is over 5 years old. Regardless, PATH and ROOTPATH were consolidated in baselayout-2.9. We should probably use that as a milestone for the current Portage behavior.
(In reply to Mike Gilbert from comment #9) > /usr/bin has been defined in PATH since baselayout-2.4, which was released > in 2017. I am very curious how you still have a working Gentoo system with > baselayout that is over 5 years old. > > Regardless, PATH and ROOTPATH were consolidated in baselayout-2.9. We should > probably use that as a milestone for the current Portage behavior. Being a source based system and with the help of quickpkg and library preserving, it is easier to keep Gentoo working with a mix of old and new packages compared to a lot of binary based Linux distros, although sometimes it can get a bit hard when updating some of the system packages especially when updating remote systems.
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=52d54aa579c60c614e45757db21fcda2721619ca commit 52d54aa579c60c614e45757db21fcda2721619ca Author: Mike Gilbert <floppym@gentoo.org> AuthorDate: 2023-03-20 16:09:26 +0000 Commit: Mike Gilbert <floppym@gentoo.org> CommitDate: 2023-03-21 21:10:29 +0000 sys-apps/portage: RDEPEND on >=sys-apps/baselayout-2.9 This ensures that baselayout defines PATH and that PATH/ROOTPATH do not differ. Closes: https://bugs.gentoo.org/902213 Signed-off-by: Mike Gilbert <floppym@gentoo.org> sys-apps/portage/{portage-3.0.44.ebuild => portage-3.0.44-r1.ebuild} | 1 + sys-apps/portage/{portage-3.0.45.2.ebuild => portage-3.0.45.2-r1.ebuild} | 1 + sys-apps/portage/{portage-3.0.45.3.ebuild => portage-3.0.45.3-r1.ebuild} | 1 + sys-apps/portage/portage-9999.ebuild | 1 + 4 files changed, 4 insertions(+)
