Bug 884283 – sci-biology/qrna-2.0.3c-r3 - EvolScoreWithRNA; ISO C99 and later do not support implicit function

• Status: CONFIRMED
• Product: Gentoo Linux

[Description Toralf Förster 2022-12-04 11:27:47 UTC]

clang -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int  -DASSERT  -I../squid -c ../src/qrnaversion.c
clang -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int  -DASSERT  -I../squid -c ../src/evolemissions.c
clang -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int  -DASSERT  -I../squid -c ../src/evolscorewithmodels.c
../src/evolscorewithmodels.c:422:3: error: call to undeclared function
      'EvolScoreWithRNA'; ISO C99 and later do not support implicit function
      declarations [-Werror,-Wimplicit-function-declaration]
  EvolScoreWithRNA(ofp, sqinfoX, isegX, sqinfoY, isegY, gss, 0, win, emo...

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1-j4-20221203-182649

  -------------------------------------------------------------------

GNUMAKEFLAGS="$GNUMAKEFLAGS --jobserver-style=pipe"
GNUMAKEFLAGS="$GNUMAKEFLAGS --shuffle"
CC=clang
CXX=clang++
gcc-config -l:
 [1] x86_64-pc-linux-gnu-12 *
clang/llvm (if any):
clang version 15.0.6
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/15/bin
Configuration file: /etc/clang/clang.cfg
/usr/lib/llvm/15
15.0.6
Python 3.10.8
Available Rust versions:
  [1]   rust-bin-1.65.0 *
The following VMs are available for generation-2:
*)	Eclipse Temurin JDK 17.0.5_p8 [openjdk-bin-17]
2)	Eclipse Temurin JDK 8.352_p08 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-bin-8 
  [2]   openjdk-bin-17  system-vm

php cli (if any):

  HEAD of ::gentoo
commit 86202b966705bfd2e3bb5ed53bb44f24f93c31c5
Author: Repository mirror & CI <[e-mail]>
Date:   Sun Dec 4 07:31:49 2022 +0000

    2022-12-04 07:31:48 UTC

emerge -qpvO sci-biology/qrna
[ebuild  N    ] sci-biology/qrna-2.0.3c-r3

[Comment 1 Toralf Förster 2022-12-04 11:27:48 UTC]

Created attachment 839721 [details]
emerge-info.txt

[Comment 2 Toralf Förster 2022-12-04 11:27:49 UTC]

Created attachment 839723 [details]
emerge-history.txt

[Comment 3 Toralf Förster 2022-12-04 11:27:51 UTC]

Created attachment 839725 [details]
environment

[Comment 4 Toralf Förster 2022-12-04 11:27:51 UTC]

Created attachment 839727 [details]
etc.clang.tar.bz2

[Comment 5 Toralf Förster 2022-12-04 11:27:52 UTC]

Created attachment 839729 [details]
etc.portage.tar.bz2

[Comment 6 Toralf Förster 2022-12-04 11:27:53 UTC]

Created attachment 839731 [details]
logs.tar.bz2

[Comment 7 Toralf Förster 2022-12-04 11:27:54 UTC]

Created attachment 839733 [details]
sci-biology:qrna-2.0.3c-r3:20221204-082951.log

[Comment 8 Toralf Förster 2022-12-04 11:27:55 UTC]

Created attachment 839735 [details]
temp.tar.bz2