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Bug 862933 - sci-libs/sundials-6.2.0 fails to compile (lto): <artificial>:(.text+0x1175): undefined reference to psolve
Summary: sci-libs/sundials-6.2.0 fails to compile (lto): <artificial>:(.text+0x1175): ...
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks: lto
  Show dependency tree
 
Reported: 2022-08-02 07:00 UTC by Agostino Sarubbo
Modified: 2022-08-02 07:00 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log.xz (build.log.xz,45.56 KB, application/x-xz)
2022-08-02 07:00 UTC, Agostino Sarubbo
Details

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Description Agostino Sarubbo gentoo-dev 2022-08-02 07:00:05 UTC
https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/

Issue: sci-libs/sundials-6.2.0 fails to compile (lto).
Discovered on: amd64 (internal ref: lto_tinderbox)

NOTE:
This machine uses lto with CFLAGS=-flto -Werror=odr -Werror=lto-type-mismatch -Werror=strict-aliasing

Here is a bit of explanation:

-Werror=lto-type-mismatch:
User to find possible runtime issues in packages. It likely means the package is unsafe to build & use with LTO.
For projects using the same identifier but with different types across different files, they must be fixed to be consistent across the codebase.

-Werror=odr:
Used to find possible runtime issues in packages. These bugs are a problem anyway but may be even worse when combined with LTO. C++ code must comply with the One Definition Rule (ODR) - see https://en.cppreference.com/w/cpp/language/definition#One_Definition_Rule.

-Werror=strict-aliasing:
Used to find possible runtime issues in packages. These bugs are a problem anyway but may be even worse when combined with LTO.

Workarounds:
- If upstream is friendly and still active, file a bug upstream. For emulators, codecs, games, or multimedia packages, it may be worth just applying a workaround instead, as upstreams sometimes aren't receptive to these bugs (VALID FOR ALL).
- Use the new 'filter-lto' from flag-o-matic.eclass as it's likely to be unsafe with LTO (VALID FOR lto-type-mismatch - odr).
- Fix it yourself if interested, of course (VALID FOR ALL).
- Append-flags -fno-strict-aliasing (VALID FOR strict-aliasing).
- Use memcpy() but a union is sometimes suitable too (VALID FOR strict-aliasing).
- -fstrict-aliasing is implied by -O2, so this must be addressed in some form (VALID FOR strict-aliasing).

See also: https://marc.info/?l=gentoo-dev&m=165639574126280&w=2
Comment 1 Agostino Sarubbo gentoo-dev 2022-08-02 07:00:08 UTC
Created attachment 796780 [details]
build.log.xz

build log and emerge --info (compressed because it exceeds attachment limit, use 'xzless' to read it)
Comment 2 Agostino Sarubbo gentoo-dev 2022-08-02 07:00:10 UTC
Error(s) that match a know pattern in addition to what has been reported in the summary:


/usr/lib/gcc/x86_64-pc-linux-gnu/12.1.1/../../../../x86_64-pc-linux-gnu/bin/ld: <artificial>:(.text+0x107a): undefined reference to `psetup'
/usr/lib/gcc/x86_64-pc-linux-gnu/12.1.1/../../../../x86_64-pc-linux-gnu/bin/ld: <artificial>:(.text+0x117c): undefined reference to `psetup'
/usr/lib/gcc/x86_64-pc-linux-gnu/12.1.1/../../../../x86_64-pc-linux-gnu/bin/ld: <artificial>:(.text+0x117f): undefined reference to `psetup'
<artificial>:(.text+0x1073): undefined reference to `psolve'
<artificial>:(.text+0x1175): undefined reference to `psolve'
<artificial>:(.text+0x1178): undefined reference to `psolve'
collect2: error: ld returned 1 exit status