Created attachment 774500 [details] build.log # emerge --info Portage 3.0.30 (python 3.9.11-final-0, default/linux/x86/17.0, gcc-11.2.1, glibc-2.34-r10, 5.17.0-pf3 i686) ================================================================= System uname: Linux-5.17.0-pf3-i686-AMD_Ryzen_7_3700X_8-Core_Processor-with-glibc2.34 KiB Mem: 32855304 total, 32791924 free KiB Swap: 0 total, 0 free Timestamp of repository gentoo: Mon, 25 Apr 2022 06:33:24 +0000 Head commit of repository gentoo: c81c2dc33199bbb43b78723b3049bff33b38ddd2 sh bash 5.1_p16 ld GNU ld (Gentoo 2.37_p1 p2) 2.37 app-misc/pax-utils: 1.3.3::gentoo app-shells/bash: 5.1_p16::gentoo dev-lang/python: 3.9.11::gentoo dev-util/cmake: 3.22.2::gentoo sys-apps/baselayout: 2.7-r3::gentoo sys-apps/openrc: 0.44.10::gentoo sys-apps/sandbox: 2.29::gentoo sys-devel/binutils: 2.37_p1-r2::gentoo sys-devel/binutils-config: 5.4.1::gentoo sys-devel/gcc: 11.2.1_p20220115::gentoo sys-devel/gcc-config: 2.5-r1::gentoo sys-devel/make: 4.3::gentoo sys-kernel/linux-headers: 5.15-r3::gentoo (virtual/os-headers) sys-libs/glibc: 2.34-r10::gentoo Repositories: gentoo location: /var/db/repos/gentoo sync-type: git sync-uri: https://github.com/gentoo-mirror/gentoo priority: -1000 ACCEPT_KEYWORDS="x86" ACCEPT_LICENSE="*" CBUILD="i686-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" CXXFLAGS="-march=native -O2 -pipe" DISTDIR="/var/cache/distfiles" EMERGE_DEFAULT_OPTS="--autounmask=y --autounmask-continue --autounmask-use=y --autounmask-write --binpkg-changed-deps=y --buildpkg-exclude virtual --buildpkg-exclude acct-* --buildpkg-exclude sys-kernel --nospinner --jobs=8 --usepkg" ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" FCFLAGS="-march=native -O2 -pipe" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch parallel-install pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict strict-keepdir unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-march=native -O2 -pipe" GENTOO_MIRRORS="https://distfiles.gentoo.org" LANG="C.UTF8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" LINGUAS=" en en_US en-US fi sv " MAKEOPTS="-j16" PKGDIR="/var/cache/binpkgs" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" USE="acl bzip2 cli crypt dbus dri elogind fortran gdbm iconv ipv6 libglvnd libtirpc ncurses nptl openmp openrc pam pcre readline seccomp split-usr ssl udev unicode x86 xattr zlib" ABI_X86="32" ADA_TARGET="gnat_2020" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx avx2 f16c fma3 mmx mmxext pclmul popcnt sha sse sse2 sse3 sse4_1 sse4_2 sse4a ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="evdev" KERNEL="linux" L10N="en en_US en-US fi sv" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LLVM_TARGETS="AMDGPU BPF" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-4 php8-0" POSTGRES_TARGETS="postgres12 postgres13" PYTHON_SINGLE_TARGET="python3_9" PYTHON_TARGETS="python3_9" RUBY_TARGETS="ruby26 ruby27" USERLAND="GNU" VIDEO_CARDS="amdgpu radeonsi" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LEX, LFLAGS, LIBTOOL, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RANLIB, READELF, RUSTFLAGS, SHELL, SIZE, STRINGS, STRIP, YACC, YFLAGS
Please expand -march=native.
# gcc -march=native -E -v - </dev/null 2>&1 | grep cc1 /usr/libexec/gcc/i686-pc-linux-gnu/11.2.1/cc1 -E -quiet -v - -march=znver2 -mmmx -mpopcnt -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -mavx -mavx2 -msse4a -mno-fma4 -mno-xop -mfma -mno-avx512f -mbmi -mbmi2 -maes -mpclmul -mno-avx512vl -mno-avx512bw -mno-avx512dq -mno-avx512cd -mno-avx512er -mno-avx512pf -mno-avx512vbmi -mno-avx512ifma -mno-avx5124vnniw -mno-avx5124fmaps -mno-avx512vpopcntdq -mno-avx512vbmi2 -mno-gfni -mno-vpclmulqdq -mno-avx512vnni -mno-avx512bitalg -mno-avx512bf16 -mno-avx512vp2intersect -mno-3dnow -madx -mabm -mno-cldemote -mclflushopt -mclwb -mclzero -mcx16 -mno-enqcmd -mf16c -mfsgsbase -mfxsr -mno-hle -msahf -mno-lwp -mlzcnt -mmovbe -mno-movdir64b -mno-movdiri -mmwaitx -mno-pconfig -mno-pku -mno-prefetchwt1 -mprfchw -mno-ptwrite -mrdpid -mrdrnd -mrdseed -mno-rtm -mno-serialize -mno-sgx -msha -mno-shstk -mno-tbm -mno-tsxldtrk -mno-vaes -mno-waitpkg -mwbnoinvd -mxsave -mxsavec -mxsaveopt -mxsaves -mno-amx-tile -mno-amx-int8 -mno-amx-bf16 -mno-uintr -mno-hreset -mno-kl -mno-widekl -mno-avxvnni --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=512 -mtune=znver2 -dumpbase - -march=i686 seems to fail with same error. This is a container if that helps (so no virtualization).
(^ that being said I have a feint feeling after enabling virtualization in my UEFI my x86's has been acting differently.)
And just to confirm, tests pass on my stable-amd64 env: ============== 16046 passed, 715 skipped, 127 xfailed, 360 warnings in 174.23s (0:02:54) ==============
Well, obviously it's a precision problem, though I was hoping it happens with some older hardware. I'm not sure if upstream is really interested in test failures on 32-bit x86 though, especially given the number of issues open. Could you please try the current stable and see whether this is a regression?
0.13.1 has the same errors. ======== 42 failed, 15987 passed, 714 skipped, 127 xfailed, 4817 warnings in 233.44s (0:03:53) ======== * ERROR: dev-python/statsmodels-0.13.1::gentoo failed (test phase): * tests fail with python3.9 (now it's down to 42 from 43) And to complete: == 86 failed, 14079 passed, 688 skipped, 128 xfailed, 6752 warnings, 329 errors in 221.39s (0:03:41) == * ERROR: dev-python/statsmodels-0.12.2-r1::gentoo failed (test phase): * tests fail with python3.9 So I guess 0.13.2 is good to be stabilized?
Could you also expand -march=native on amd64 on that machine? Yes, please stabilize and I'll try to figure out x86 later.
# gcc -march=native -E -v - </dev/null 2>&1 | grep cc1 /usr/libexec/gcc/x86_64-pc-linux-gnu/11.2.1/cc1 -E -quiet -v - -march=znver2 -mmmx -mpopcnt -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -mavx -mavx2 -msse4a -mno-fma4 -mno-xop -mfma -mno-avx512f -mbmi -mbmi2 -maes -mpclmul -mno-avx512vl -mno-avx512bw -mno-avx512dq -mno-avx512cd -mno-avx512er -mno-avx512pf -mno-avx512vbmi -mno-avx512ifma -mno-avx5124vnniw -mno-avx5124fmaps -mno-avx512vpopcntdq -mno-avx512vbmi2 -mno-gfni -mno-vpclmulqdq -mno-avx512vnni -mno-avx512bitalg -mno-avx512bf16 -mno-avx512vp2intersect -mno-3dnow -madx -mabm -mno-cldemote -mclflushopt -mclwb -mclzero -mcx16 -mno-enqcmd -mf16c -mfsgsbase -mfxsr -mno-hle -msahf -mno-lwp -mlzcnt -mmovbe -mno-movdir64b -mno-movdiri -mmwaitx -mno-pconfig -mno-pku -mno-prefetchwt1 -mprfchw -mno-ptwrite -mrdpid -mrdrnd -mrdseed -mno-rtm -mno-serialize -mno-sgx -msha -mno-shstk -mno-tbm -mno-tsxldtrk -mno-vaes -mno-waitpkg -mwbnoinvd -mxsave -mxsavec -mxsaveopt -mxsaves -mno-amx-tile -mno-amx-int8 -mno-amx-bf16 -mno-uintr -mno-hreset -mno-kl -mno-widekl -mno-avxvnni --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=512 -mtune=znver2 -dumpbase -
Could you try reporting this upstream? https://github.com/statsmodels/statsmodels/issues I suppose one option is to increase the tolerance, either unconditionally or conditionally to x86.
One more idea: could you try if appending `-mfpmath=sse` to CFLAGS fixes the tests?
Unfortunately it makes no difference. I've filed bug upstream.
0.14.0 continuing to get worse. 48 failed, 17561 passed, 296 skipped, 139 xfailed, 1021 warnings in 131.87s (0:02:11)
The bug has been referenced in the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=830cd7719231b4c34d98a000035154e5d53d5d02 commit 830cd7719231b4c34d98a000035154e5d53d5d02 Author: Sam James <sam@gentoo.org> AuthorDate: 2023-12-25 07:33:20 +0000 Commit: Sam James <sam@gentoo.org> CommitDate: 2023-12-25 07:33:20 +0000 dev-python/pandas: drop statsmodels dep on x86 It's a test-only optional dep and statsmodels is busted on x86. Bug: https://bugs.gentoo.org/840770 Bug: https://bugs.gentoo.org/905736 Bug: https://bugs.gentoo.org/908367 Signed-off-by: Sam James <sam@gentoo.org> dev-python/pandas/pandas-1.5.3.ebuild | 4 ++-- dev-python/pandas/pandas-2.1.1.ebuild | 4 ++-- dev-python/pandas/pandas-2.1.3.ebuild | 4 ++-- dev-python/pandas/pandas-2.1.4.ebuild | 4 ++-- 4 files changed, 8 insertions(+), 8 deletions(-)