test_unknown_exttyp (tests.test_validation.ValidationTest) ... ok test_validate_bad_files (tests.test_validation.ValidationTest) ... ok test_validate_good_and_bad_files (tests.test_validation.ValidationTest) ... ok test_validate_good_files (tests.test_validation.ValidationTest) ... ok ====================================================================== FAIL: test_data_values_are_correct (tests.test_bzip2mrcfile.Bzip2MrcFileTest) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/mrcfile-1.3.0/work/mrcfile-1.3.0/tests/test_mrcfile.py", line 139, in test_data_values_are_correct self.assertAlmostEqual(calc_mean, mrc.header.dmean) AssertionError: 0.7836121 != array(0.783612, dtype=float32) within 7 places (5.9604645e-08 difference) ====================================================================== FAIL: test_data_values_are_correct (tests.test_gzipmrcfile.GzipMrcFileTest) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/mrcfile-1.3.0/work/mrcfile-1.3.0/tests/test_mrcfile.py", line 139, in test_data_values_are_correct self.assertAlmostEqual(calc_mean, mrc.header.dmean) AssertionError: 0.7836121 != array(0.783612, dtype=float32) within 7 places (5.9604645e-08 difference) ====================================================================== FAIL: test_data_values_are_correct (tests.test_mrcfile.MrcFileTest) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/mrcfile-1.3.0/work/mrcfile-1.3.0/tests/test_mrcfile.py", line 139, in test_data_values_are_correct self.assertAlmostEqual(calc_mean, mrc.header.dmean) AssertionError: 0.7836121 != array(0.783612, dtype=float32) within 7 places (5.9604645e-08 difference) ====================================================================== FAIL: test_data_values_are_correct (tests.test_mrcmemmap.MrcMemmapTest) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/mrcfile-1.3.0/work/mrcfile-1.3.0/tests/test_mrcfile.py", line 139, in test_data_values_are_correct self.assertAlmostEqual(calc_mean, mrc.header.dmean) AssertionError: 0.7836121 != array(0.783612, dtype=float32) within 7 places (5.9604645e-08 difference) ---------------------------------------------------------------------- Ran 710 tests in 13.130s FAILED (failures=4) * ERROR: dev-python/mrcfile-1.3.0::gentoo failed (test phase): * Tests failed with python3.9 * * Call stack: * ebuild.sh, line 127: Called src_test * environment, line 3083: Called distutils-r1_src_test * environment, line 1419: Called _distutils-r1_run_foreach_impl 'python_test' * environment, line 538: Called python_foreach_impl 'distutils-r1_run_phase' 'python_test' * environment, line 2760: Called multibuild_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_test' * environment, line 2309: Called _multibuild_run '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_test' * environment, line 2307: Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'python_test' * environment, line 871: Called distutils-r1_run_phase 'python_test' * environment, line 1346: Called python_test * environment, line 3050: Called distutils-r1_python_test * environment, line 1304: Called eunittest * environment, line 1861: Called die * The specific snippet of code: * "${@}" || die -n "Tests failed with ${EPYTHON}"; * * If you need support, post the output of `emerge --info '=dev-python/mrcfile-1.3.0::gentoo'`, * the complete build log and the output of `emerge -pqv '=dev-python/mrcfile-1.3.0::gentoo'`. * The complete build log is located at '/var/tmp/portage/dev-python/mrcfile-1.3.0/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/dev-python/mrcfile-1.3.0/temp/environment'. * Working directory: '/var/tmp/portage/dev-python/mrcfile-1.3.0/work/mrcfile-1.3.0' * S: '/var/tmp/portage/dev-python/mrcfile-1.3.0/work/mrcfile-1.3.0'
Portage 3.0.30 (python 3.9.10-final-0, default/linux/amd64/17.1/systemd, gcc-11.2.0, glibc-2.33-r13, 5.10.68-gentoo-dist x86_64) ================================================================= System uname: Linux-5.10.68-gentoo-dist-x86_64-Common_KVM_processor-with-glibc2.33 KiB Mem: 65850752 total, 33484028 free KiB Swap: 0 total, 0 free Timestamp of repository gentoo: Thu, 10 Mar 2022 08:00:01 +0000 Head commit of repository gentoo: b1d3cbfd194ab33e82e5a0fb0162a4ca11cf7273 sh bash 5.1_p16 ld GNU ld (Gentoo 2.37_p1 p0) 2.37 app-misc/pax-utils: 1.3.3::gentoo app-shells/bash: 5.1_p16::gentoo dev-java/java-config: 2.3.1::gentoo dev-lang/perl: 5.34.0-r6::gentoo dev-lang/python: 2.7.18_p14::gentoo, 3.6.15-r1::gentoo, 3.7.12_p2::gentoo, 3.8.12_p2::gentoo, 3.9.10_p1::gentoo, 3.10.2_p1::gentoo dev-lang/rust-bin: 1.58.1::gentoo dev-util/cmake: 3.22.2::gentoo dev-util/meson: 0.60.3::gentoo sys-apps/baselayout: 2.7-r3::gentoo sys-apps/sandbox: 2.25::gentoo sys-apps/systemd: 250.2::gentoo sys-devel/autoconf: 2.13-r1::gentoo, 2.71-r1::gentoo sys-devel/automake: 1.16.4::gentoo sys-devel/binutils: 2.37_p1::gentoo sys-devel/binutils-config: 5.4::gentoo sys-devel/clang: 13.0.0::gentoo sys-devel/gcc: 11.2.0::gentoo sys-devel/gcc-config: 2.5-r1::gentoo sys-devel/libtool: 2.4.6-r6::gentoo sys-devel/llvm: 13.0.0::gentoo sys-devel/make: 4.3::gentoo sys-kernel/linux-headers: 5.15-r3::gentoo (virtual/os-headers) sys-libs/glibc: 2.33-r13::gentoo Repositories: gentoo location: /var/db/repos/gentoo sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 sync-rsync-verify-metamanifest: yes sync-rsync-verify-max-age: 24 sync-rsync-verify-jobs: 1 sync-rsync-extra-opts: crossdev location: /var/db/repos/crossdev masters: gentoo priority: 10 ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="* @FREE @BINARY-REDISTRIBUTABLE" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /var/spool/munin-async/.ssh" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php7.3/ext-active/ /etc/php/apache2-php7.4/ext-active/ /etc/php/apache2-php8.0/ext-active/ /etc/php/cgi-php7.3/ext-active/ /etc/php/cgi-php7.4/ext-active/ /etc/php/cgi-php8.0/ext-active/ /etc/php/cli-php7.3/ext-active/ /etc/php/cli-php7.4/ext-active/ /etc/php/cli-php8.0/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O2 -pipe" DISTDIR="/var/cache/distfiles" EMERGE_DEFAULT_OPTS="--jobs 10" ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://mirror.netcologne.de/gentoo/" LANG="en_US.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" PKGDIR="/var/cache/binpkgs" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" SHELL="/bin/bash" USE="X acl amd64 bzip2 cli crypt dri fortran gdbm iconv ipv6 libglvnd libtirpc multilib ncurses nls nptl openmp pam pcre readline seccomp split-usr ssl systemd udev unicode xattr zlib" ABI_X86="64" ADA_TARGET="gnat_2020" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2 sse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-4 php8-0" POSTGRES_TARGETS="postgres12 postgres13" PYTHON_SINGLE_TARGET="python3_9" PYTHON_TARGETS="python3_9" RUBY_TARGETS="ruby26 ruby27" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LEX, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, MAKEOPTS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS
Created attachment 766723 [details] build log
With 1.4.2 they are also broken on amd64... ====================================================================== FAIL: test_data_is_not_copied_unnecessarily (tests.test_bzip2mrcfile.Bzip2MrcFileTest) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/mrcfile-1.4.3/work/mrcfile-1.4.3/tests/test_mrcobject.py", line 341, in test_data_is_not_copied_unnecessarily assert self.mrcobject.data is data AssertionError ====================================================================== FAIL: test_data_is_not_copied_unnecessarily (tests.test_gzipmrcfile.GzipMrcFileTest) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/mrcfile-1.4.3/work/mrcfile-1.4.3/tests/test_mrcobject.py", line 341, in test_data_is_not_copied_unnecessarily assert self.mrcobject.data is data AssertionError ====================================================================== FAIL: test_data_is_not_copied_unnecessarily (tests.test_mrcobject.MrcObjectTest) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/mrcfile-1.4.3/work/mrcfile-1.4.3/tests/test_mrcobject.py", line 341, in test_data_is_not_copied_unnecessarily assert self.mrcobject.data is data AssertionError ====================================================================== FAIL: test_data_is_not_copied_unnecessarily (tests.test_mrcinterpreter.MrcInterpreterTest) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/mrcfile-1.4.3/work/mrcfile-1.4.3/tests/test_mrcobject.py", line 341, in test_data_is_not_copied_unnecessarily assert self.mrcobject.data is data AssertionError ====================================================================== FAIL: test_data_is_not_copied_unnecessarily (tests.test_mrcfile.MrcFileTest) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/mrcfile-1.4.3/work/mrcfile-1.4.3/tests/test_mrcobject.py", line 341, in test_data_is_not_copied_unnecessarily assert self.mrcobject.data is data AssertionError What is the updated error with x86 and the latest version? Maybe the original failure was solved... but now they fail in a different way :S
The bug has been referenced in the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e50f936c3b5f63ad22457240cecf48cfba3c1c28 commit e50f936c3b5f63ad22457240cecf48cfba3c1c28 Author: Pacho Ramos <pacho@gentoo.org> AuthorDate: 2023-05-02 19:18:43 +0000 Commit: Pacho Ramos <pacho@gentoo.org> CommitDate: 2023-05-02 19:20:09 +0000 dev-python/mrcfile: Apply Debian patch to allow tests to pass further Upstream still didn't port the tests to work with latest numpy versions: https://github.com/ccpem/mrcfile/issues/49 Debian maintainers modified the test meantime to pass until they are properly fixed upstream. Bug: https://bugs.gentoo.org/834884 Signed-off-by: Pacho Ramos <pacho@gentoo.org> .../files/mrcfile-1.4.3-test-assertion-error.patch | 25 ++++++++++++++++++++++ dev-python/mrcfile/mrcfile-1.4.3.ebuild | 5 +++++ 2 files changed, 30 insertions(+)
That solves the issue for amd64, can you retry on x86? I think they will also work except if you are testing on i586 https://github.com/ccpem/mrcfile/issues/53
