Bug 834092 – media-libs/opencv-4.5.5-r1[vtk] with sci-libs/vtk-9.1.0 - CMake Error at /usr/lib64/cmake/vtk-9.1/vtkm/VTKmTargets.cmake:37 (message): Some (but not all) targets in this export set were already defined.

• Status: RESOLVED FIXED
• Product: Gentoo Linux

[Description Dennis Schridde 2022-02-26 15:48:33 UTC]

-- Found TBB (env): /lib64/libtbb.so                                                                                                                                                  
-- Could not find OpenBLAS lib. Turning OpenBLAS_FOUND off                                                                                                                            
-- Could NOT find Atlas (missing: Atlas_BLAS_LIBRARY)                                                                                                                                 
-- Found PkgConfig: /usr/sbin/x86_64-pc-linux-gnu-pkg-config (found version "1.8.0") 
-- Checking for module 'blas'                                 
--   Found blas, version 3.10.0                           
-- Checking for module 'lapack'                                             
--   Found lapack, version 3.10.0                               
-- LAPACK(LAPACK/Generic): LAPACK_LIBRARIES: blas;lapack;cblas
-- LAPACK(LAPACK/Generic): Support is enabled.               
CMake Error at /usr/lib64/cmake/vtk-9.1/vtkm/VTKmTargets.cmake:37 (message):                                                                                                          
  Some (but not all) targets in this export set were already defined.                                                                                                                 
                                                                                           
  Targets Defined: tbb                          
                                                                                           
  Targets not yet defined:                        
  vtkm_vectorization_flags;vtkm_compiler_flags;vtkm_developer_flags;vtkmdiympi_nompi;vtkmdiy;diy_developer_flags;vtkm_diy;vtkm_lodepng;vtkm_loguru;vtkm_optionparser;vtkm_lcl;vtkm_cont;vtkm_cont_testing;vtkm_worklet;vtkm_filter_common;vtkm_filter_extra;vtkm_filter_contour;vtkm_filter_gradient;vtkm_filter;vtkm_io;vtkm_source                                        
                                                                                           
                                                                                                                                                                                      
Call Stack (most recent call first):                                                                                                                                                  
  /usr/lib64/cmake/vtk-9.1/vtkm/VTKmConfig.cmake:144 (include)                                                                                                                        
  /usr/lib64/cmake/vtk-9.1/vtk-config.cmake:129 (find_package)                                                                                                                        
  cmake/OpenCVDetectVTK.cmake:2 (find_package)                         
  CMakeLists.txt:815 (include)                                                                                                                                                        
                                                                                           
                                                                                           
-- Configuring incomplete, errors occurred!             
See also "/tmp/portage/media-libs/opencv-4.5.5-r1/work/opencv-4.5.5_build-abi_x86_64.amd64/CMakeFiles/CMakeOutput.log".                                                               
See also "/tmp/portage/media-libs/opencv-4.5.5-r1/work/opencv-4.5.5_build-abi_x86_64.amd64/CMakeFiles/CMakeError.log".                                                                


Reproducible: Always




Portage 3.0.30 (python 3.9.10-final-0, default/linux/amd64/17.1/desktop/plasma/systemd, gcc-11.2.1, glibc-2.34-r9, 5.16.11-gentoo-dist x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-5.16.11-gentoo-dist-x86_64-AMD_Ryzen_5_2400G_with_Radeon_Vega_Graphics-with-glibc2.34
KiB Mem:    14186504 total,    436620 free
KiB Swap:    4194300 total,   4172796 free
Timestamp of repository gentoo: Fri, 25 Feb 2022 16:45:01 +0000
Head commit of repository gentoo: cde79fe919fa29946337a61d4729672b7462c407
Timestamp of repository haskell: Fri, 25 Feb 2022 16:08:04 +0000
Head commit of repository haskell: 72d51c635039f565023e90f857fe4e3974257d41

Head commit of repository local: bcfadff1cc09af836647ac57ae1205efde0e7ba5

sh bash 5.1_p16
ld GNU ld (Gentoo 2.37_p1 p2) 2.37
ccache version 4.5.1 [disabled]
app-misc/pax-utils:        1.3.3::gentoo
app-shells/bash:           5.1_p16::gentoo
dev-java/java-config:      2.3.1::gentoo
dev-lang/perl:             5.34.0-r8::gentoo
dev-lang/python:           2.7.18_p13::gentoo, 3.9.10-r1::gentoo, 3.10.2-r1::gentoo
dev-lang/rust:             1.58.1::gentoo
dev-util/ccache:           4.5.1::gentoo
dev-util/cmake:            3.22.2::gentoo
dev-util/meson:            0.60.3::gentoo
sys-apps/baselayout:       2.8::gentoo
sys-apps/sandbox:          2.29::gentoo
sys-apps/systemd:          250.3::gentoo
sys-devel/autoconf:        2.13-r1::gentoo, 2.71-r1::gentoo
sys-devel/automake:        1.16.5::gentoo
sys-devel/binutils:        2.37_p1-r2::gentoo
sys-devel/binutils-config: 5.4.1::gentoo
sys-devel/clang:           13.0.1::gentoo
sys-devel/gcc:             11.2.1_p20220115::gentoo
sys-devel/gcc-config:      2.5-r1::gentoo
sys-devel/libtool:         2.4.6-r6::gentoo
sys-devel/lld:             13.0.1::gentoo
sys-devel/llvm:            13.0.1::gentoo
sys-devel/make:            4.3::gentoo
sys-kernel/linux-headers:  5.16::gentoo (virtual/os-headers)
sys-libs/glibc:            2.34-r9::gentoo
Repositories:

gentoo
    location: /var/cache/portage/gentoo
    sync-type: rsync
    sync-uri: rsync://rsync.de.gentoo.org/gentoo-portage
    priority: -1000
    sync-rsync-extra-opts: --new-compress
    sync-rsync-verify-metamanifest: yes
    sync-rsync-verify-jobs: 1
    sync-rsync-verify-max-age: 24

haskell
    location: /var/db/repos/haskell
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/haskell.git
    masters: gentoo

crossdev
    location: /var/cache/portage/crossdev
    masters: gentoo
    priority: 100

local
    location: /var/cache/portage/local
    sync-type: git
    sync-uri: https://github.com/devurandom/gentoo-overlay.git
    masters: gentoo
    priority: 1000

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="@FREE"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-pipe -O2 -march=znver1"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/maven-bin-3.8/conf"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-pipe -O2 -march=znver1"
DISTDIR="/var/cache/portage/distfiles"
EMERGE_DEFAULT_OPTS="--nospinner"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg-live buildsyspkg cgroup compressdebug config-protect-if-modified distlocks ebuild-locks fakeroot fixlafiles ipc-sandbox merge-sync mount-sandbox multilib-strict network-sandbox news parallel-fetch parallel-install pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror/ http://ftp.fau.de/gentoo http://ftp.halifax.rwth-aachen.de/gentoo/ http://ftp-stud.hs-esslingen.de/pub/Mirrors/gentoo/ http://distfiles.gentoo.org"
LANG="en_US.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j6 -l4"
PKGDIR="/var/cache/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_EXTRA_OPTS="--new-compress"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/tmp"
SHELL="/bin/bash"
USE="7z 7zip X a52 aac aacplus aacs acl acpi activities aio alsa amd64 amr appindicator appstream aptx archive audit avahi avif ayatana bdplus blake2 blas bluetooth bluray bpf branding brotli bs2b btrfs bzip2 cairo caps cdda cddb cdio cdr celt chromaprint cjk cli clipboard color-management colord conntrack crypt cups curl d3d9 dav1d dbus declarative device-mapper dirac djvu dmabuf dri drm dts dvb dvd dvdr ed25519 editorconfig egl elf emoji encode epub evdev exif faudio fax fdk ffmpeg fftw filecaps firefox firewalld fish-completion fits flac fontconfig fontforge fortran fribidi gamepad gbm gdal gdbm geoclue geolocation gif git gles2 gles3 gmp gnome-online-accounts gnupg google googledrive gpg gps graphicsmagick graphite gstreamer gtk gtk3 gui gzip harfbuzz hdf5 heif http2 hugepages ibus iconv icu id3tag idn imlib inotify introspection ipv6 iwd jemalloc jpeg jpeg2k json kde kms kwallet lapack latex lcms ldac libatomic libglvnd libidn2 libinput libnotify libproxy libsecret libsoxr libtirpc libvirt lm-sensors lrz lto lv2 lvm lz4 lzma lzo mad magic man mariadb markdown mbim mercurial mjpeg mng mobi modemmanager modplug mp3 mp4 mpeg mplayer mpris mtp multilib mysql ncurses netlink networkmanager nftables nls nptl numa office ofx ogg openal opencl opencv openexr opengl openh264 openmax openmp opus otf pam pango pcap pcre pcre2 pdf pgo pipewire pixman pkcs11 pkcs7 plasma pm-utils png policykit postscript ppds prison pulseaudio python qml qrcode qt5 rav1e raw rdp readline rtmp rubberband samba sasl scanner schroedinger screencast sctp sdl sdl2 seatd seccomp semantic-desktop share smartcard snappy sparse speech speex spell spice srt ssl startup-notification steamruntime stemmer svg systemd tbb teamd telemetry telepathy tga theora threads thunderbolt tiff timezone tmux tpm truetype udev udisks uinput unicode unwind upnp upnp-av upower usb utempter v4l v4l2 vaapi vamp vdpau vkd3d vorbis vpx vtk vulkan wasm wavpack wayland webchannel webengine webp widgets wireguard wmf woff2 wps x264 x265 xattr xcb xinerama xkb xml xmp xrandr xscreensaver xv xvid xwayland xxhash xz yaml zeroconf zeromq zimg zlib zstd" ABI_X86="64" ADA_TARGET="gnat_2020" ALSA_CARDS="hda-intel" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx avx2 f16c fma3 mmx mmxext pclmul popcnt rdrand sha sse sse2 sse3 sse4_1 sse4_2 sse4a ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="efi-64" INPUT_DEVICES="joystick libinput" KERNEL="linux" L10N="de de-DE en en-GB ar fa tr ja ko zh zh-CN zh-TW" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="nlpsolver scripting-javascript wiki-publisher" LLVM_TARGETS="AMDGPU BPF RISCV WebAssembly" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1 lua5-4 luajit" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-4 php8-0" POSTGRES_TARGETS="postgres12 postgres13" PYTHON_SINGLE_TARGET="python3_9" PYTHON_TARGETS="python3_9 pypy3" QEMU_SOFTMMU_TARGETS="riscv32 riscv64 x86_64" QEMU_USER_TARGETS="riscv32 riscv64" RUBY_TARGETS="ruby26 ruby27" USERLAND="GNU" VIDEO_CARDS="amdgpu virgl" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LEX, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS

=================================================================
                        Package Settings
=================================================================

sci-libs/vtk-9.1.0::gentoo was built with the following:
USE="boost ffmpeg gdal mysql openmp python qt5 rendering tbb threads -all-modules -cuda -debug -doc -examples -imaging -java -mpi -odbc -postgres -test -tk -views -web" ABI_X86="(64)" PYTHON_SINGLE_TARGET="python3_9 -python3_10 -python3_8" VIDEO_CARDS="-nvidia"
FEATURES="assume-digests qa-unresolved-soname-deps binpkg-multi-instance distlocks binpkg-logs ipc-sandbox usersync parallel-fetch sfperms buildpkg-live parallel-install preserve-libs compressdebug sandbox binpkg-docompress userpriv strict usersandbox ebuild-locks fixlafiles xattr fakeroot news unknown-features-warn unmerge-orphans buildsyspkg pid-sandbox unmerge-logs merge-sync binpkg-dostrip cgroup multilib-strict mount-sandbox userfetch config-protect-if-modified protect-owned network-sandbox"


media-libs/opencv-4.5.5-r1::gentoo was built with the following:
USE="contrib contribdnn contribfreetype eigen features2d ffmpeg gdal gstreamer jpeg jpeg2k lapack lto opencl openexr opengl openmp png python qt5 threads tiff v4l vaapi vtk webp -contribcvv -contribhdf (-contribovis) -contribsfm -contribxfeatures2d -cuda -debug -dnnsamples -download -examples -gflags -glog -gphoto2 -gtk3 -ieee1394 -java -opencvapps -tesseract -testprograms -xine" ABI_X86="32 (64) (-x32)" CPU_FLAGS_X86="avx avx2 f16c fma3 popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3 -avx512f" PYTHON_TARGETS="python3_9 -python3_10 -python3_8"

[Comment 1 Dennis Schridde 2022-02-26 15:49:35 UTC]

Created attachment 765888 [details]
build.log

[Comment 2 Dennis Schridde 2022-02-26 15:49:49 UTC]

Created attachment 765889 [details]
CMakeOutput.log

[Comment 3 Dennis Schridde 2022-02-26 15:50:01 UTC]

Created attachment 765890 [details]
CMakeError.log

[Comment 4 Larry the Git Cow 2022-06-07 04:36:59 UTC]

The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=2d5e4062df38b6faa35d2d2c1f785bc2f138a548

commit 2d5e4062df38b6faa35d2d2c1f785bc2f138a548
Author:     Sam James <[e-mail]>
AuthorDate: 2022-06-07 04:34:48 +0000
Commit:     Sam James <[e-mail]>
CommitDate: 2022-06-07 04:36:52 +0000

    media-libs/opencv: add 4.6.0
    
    Bug: https://bugs.gentoo.org/834092
    Closes: https://bugs.gentoo.org/830185
    Signed-off-by: Sam James <[e-mail]>

 media-libs/opencv/Manifest            |   2 +
 media-libs/opencv/opencv-4.6.0.ebuild | 580 ++++++++++++++++++++++++++++++++++
 2 files changed, 582 insertions(+)

[Comment 5 Attila Tóth 2022-07-13 11:10:41 UTC]

I've just hit this bug with media-libs/opencv-4.6.0-r2, while I have sci-libs/vtk-9.1.0-r2 installed...

[Comment 6 Andreas Sturmlechner 2022-09-14 08:56:39 UTC]

(In reply to Attila Tóth from comment #5)
> I've just hit this bug with media-libs/opencv-4.6.0-r2, while I have
> sci-libs/vtk-9.1.0-r2 installed...
Not reproducible for me. At the same time vtk-9.1.0-r2 is not yet stable so it does not block further opencv stabilisation.

Will revert back to assuming 4.6.0 is fixed for vtk-9.1.0, for
- lack of 4.6.0-fail.build.log
- lack of Dennis' response here

Please check back if you have more information.

[Comment 7 Dennis Schridde 2022-09-14 10:53:33 UTC]

I have media-libs/opencv-4.6.0-r2 installed with USE=-vtk.  I did not try to reproduce the problem recently, but decided to avoid it.

[Comment 8 Andreas Sturmlechner 2022-09-15 17:26:13 UTC]

media-libs/opencv-4.5.5 was cleaned up. Please re-open if this is reproduced with 4.6.0.