Bug 833770 – sci-biology/STAR-2.7.10a calls ar directly

• Status: RESOLVED FIXED
• Product: Gentoo Linux

[Description Agostino Sarubbo 2022-02-19 15:35:12 UTC]

https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/

Issue: sci-biology/STAR-2.7.10a calls ar directly.
Discovered on: amd64 (internal ref: ci)

NOTE:
As per QA policy, toolchain tools must not be called directly because they can cause issue in cross-compiling and because is not possible use a different AR implementation (like llvm-ar). To reproduce, please use sys-devel/gcc-config[-native-symlinks], sys-devel/binutils-config[-native-symlinks].

[Comment 1 Agostino Sarubbo 2022-02-19 15:35:15 UTC]

Created attachment 765475 [details]
build.log

build log and emerge --info

[Comment 2 Agostino Sarubbo 2022-02-19 15:35:17 UTC]

Error(s) that match a know pattern:


make[1]: ar: No such file or directory

[Comment 3 Larry the Git Cow 2022-02-19 19:56:12 UTC]

The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=49b36caac2597482c792bee0884ae34bea231806

commit 49b36caac2597482c792bee0884ae34bea231806
Author:     David Seifert <[e-mail]>
AuthorDate: 2022-02-19 19:56:01 +0000
Commit:     David Seifert <[e-mail]>
CommitDate: 2022-02-19 19:56:01 +0000

    sci-biology/STAR: unbundle htslib properly
    
    Closes: https://bugs.gentoo.org/833770
    Signed-off-by: David Seifert <[e-mail]>

 sci-biology/STAR/STAR-2.7.10a.ebuild               |   8 +
 .../STAR/files/STAR-2.7.10a-fix-build-system.patch | 195 +++++++++++++++++++++
 2 files changed, 203 insertions(+)