Bug 830041 – sci-biology/kallisto-0.46.2 - /.../Bootstrap.h: error: uint has not been declared

• Status: CONFIRMED
• Product: Gentoo Linux

[Description Toralf Förster 2021-12-27 09:02:44 UTC]

too long lines were shrinked:

[15/21] /usr/bin/x86_64-gentoo-linux-musl-g++  -I/var/tmp/portage/sci-biology/kallisto-0.46.2/work/kallisto-0.46.2/src  -pipe -march=native -fno-diagnostics-color -O2 -std=c++11 -MD -MT src/CMakeFiles/kallisto_core.dir/Bootstrap.cpp.o -MF src/CMakeFiles/kallisto_core.dir/Bootstrap.cpp.o.d -o src/CMa
FAILED: src/CMakeFiles/kallisto_core.dir/Bootstrap.cpp.o 
/usr/bin/x86_64-gentoo-linux-musl-g++  -I/var/tmp/portage/sci-biology/kallisto-0.46.2/work/kallisto-0.46.2/src  -pipe -march=native -fno-diagnostics-color -O2 -std=c++11 -MD -MT src/CMakeFiles/kallisto_core.dir/Bootstrap.cpp.o -MF src/CMakeFiles/kallisto_core.dir/Bootstrap.cpp.o.d -o src/CMakeFiles/
In file included from /var/tmp/portage/sci-biology/kallisto-0.46.2/work/kallisto-0.46.2/src/Bootstrap.cpp:1:
/var/tmp/portage/sci-biology/kallisto-0.46.2/work/kallisto-0.46.2/src/Bootstrap.h:57:106: error: 'uint' has not been declared
   57 |       const std::vector<int>& fld, const std::vector<int>& preBias, const std::vector<double>& postBias, uint compression, size_t index_version,
      |                                                                                                          ^~~~

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.0_musl_hardened-j4-20211222-090216

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-gentoo-linux-musl-11.2.1 *
clang version 13.0.0
Target: x86_64-gentoo-linux-musl
Thread model: posix
InstalledDir: /usr/lib/llvm/13/bin
/usr/lib/llvm/13
13.0.0
Python 3.9.9
Available Ruby profiles:
  [1]   ruby26 (with Rubygems)
  [2]   ruby27 (with Rubygems)
  [3]   ruby30 (with Rubygems) *
Available Rust versions:
  [1]   rust-1.57.0 *
php cli:

  HEAD of ::gentoo
commit 37c76a779e7867c4044bc8e2db428a29f173a46a
Author: Repository mirror & CI <[e-mail]>
Date:   Sun Dec 26 20:07:29 2021 +0000

    2021-12-26 20:07:27 UTC

emerge -qpvO sci-biology/kallisto
[ebuild  N    ] sci-biology/kallisto-0.46.2  USE="-hdf5 -test"

[Comment 1 Toralf Förster 2021-12-27 09:02:45 UTC]

Created attachment 760226 [details]
emerge-info.txt

[Comment 2 Toralf Förster 2021-12-27 09:02:47 UTC]

Created attachment 760227 [details]
emerge-history.txt

[Comment 3 Toralf Förster 2021-12-27 09:02:48 UTC]

Created attachment 760228 [details]
environment

[Comment 4 Toralf Förster 2021-12-27 09:02:49 UTC]

Created attachment 760229 [details]
etc.portage.tar.bz2

[Comment 5 Toralf Förster 2021-12-27 09:02:50 UTC]

Created attachment 760230 [details]
logs.tar.bz2

[Comment 6 Toralf Förster 2021-12-27 09:02:51 UTC]

Created attachment 760231 [details]
sci-biology:kallisto-0.46.2:20211226-211928.log

[Comment 7 Toralf Förster 2021-12-27 09:02:52 UTC]

Created attachment 760232 [details]
temp.tar.bz2