too long lines were shrinked: [444/1119] /usr/bin/x86_64-gentoo-linux-musl-g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -Isrc -I/var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src -isystem /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/external/thread FAILED: src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o /usr/bin/x86_64-gentoo-linux-musl-g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -Isrc -I/var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src -isystem /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/external/thread_mpi/includ In file included from /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/gromacs/applied_forces/awh/histogramsize.cpp:47: /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/gromacs/applied_forces/awh/histogramsize.h:172:5: error: 'int64_t' does not name a type 172 | int64_t numUpdates_; /**< The number of updates performed since the start of the simulation. */ | ^~~~~~~ /var/tmp/portage/sci-chemistry/gromacs-2021.3-r1/work/gromacs-2021.3/src/gromacs/applied_forces/awh/histogramsize.h:60:1: note: 'int64_t' is defined in header '<cstdint>'; did you forget to '#include <cstdint>'? 59 | #include "gromacs/math/vectypes.h" ------------------------------------------------------------------- This is an stable amd64 chroot image at a tinderbox (==build bot) name: 17.0_musl_hardened-j4_stable-20211209-194823 ------------------------------------------------------------------- gcc-config -l: [1] x86_64-gentoo-linux-musl-11.2.0 * Python 3.9.9 Available Rust versions: [1] rust-bin-1.56.1 * php cli: HEAD of ::gentoo commit 405da333b415c85be2ec5eb9b347a5e2ed74de71 Author: Repository mirror & CI <repomirrorci@gentoo.org> Date: Thu Dec 9 22:22:06 2021 +0000 2021-12-09 22:22:02 UTC emerge -qpvO sci-chemistry/gromacs [ebuild N ] sci-chemistry/gromacs-2021.3-r1 USE="custom-cflags doc double-precision fftw gmxapi gmxapi-legacy hwloc lmfit offensive openmp single-precision threads tng -X -blas -build-manual (-cuda) -lapack (-mkl) -mpi -opencl (-python) -test" CPU_FLAGS_X86="avx avx2 sse2 sse4_1 -avx512f -fma4" PYTHON_SINGLE_TARGET="python3_9 -python3_8"
Created attachment 757919 [details] emerge-info.txt
Created attachment 757920 [details] emerge-history.txt
Created attachment 757921 [details] environment
Created attachment 757922 [details] etc.portage.tar.bz2
Created attachment 757923 [details] logs.tar.bz2
Created attachment 757924 [details] sci-chemistry:gromacs-2021.3-r1:20211209-224150.log
Created attachment 757925 [details] temp.tar.bz2
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3be10d9efadf209bd58dc917671b4584c49824a6 commit 3be10d9efadf209bd58dc917671b4584c49824a6 Author: Alexey Shvetsov <alexxy@gentoo.org> AuthorDate: 2022-02-21 16:33:29 +0000 Commit: Alexey Shvetsov <alexxy@gentoo.org> CommitDate: 2022-02-21 16:36:36 +0000 sci-chemistry/gromacs: Fix build for musl Closes: https://bugs.gentoo.org/828673 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org> .../gromacs/files/gromacs-2021-musl-stdint.patch | 25 ++++++++++++++++++++++ sci-chemistry/gromacs/gromacs-2021.3-r1.ebuild | 2 ++ sci-chemistry/gromacs/gromacs-2021.5.ebuild | 2 ++ 3 files changed, 29 insertions(+)
