Created attachment 745239 [details] build.log =========================== short test summary info ============================ FAILED tidy/test_tidy.py::TidyTestCase::test_bad_option_values - AssertionErr... FAILED tidy/test_tidy.py::TidyTestCase::test_bad_options - AssertionError: In... FAILED tidy/test_tidy.py::TidyTestCase::test_error_lines - IndexError: list i... FAILED tidy/test_tidy.py::TidyTestCase::test_nonexisting - IndexError: list i... FAILED tidy/test_tidy.py::TidyTestCase::test_options - AssertionError: True i... ============ 5 failed, 8 passed, 1 deselected, 12 warnings in 0.42s ============ * ERROR: dev-python/utidylib-0.7-r2::gentoo failed (test phase): * pytest failed with python3.9 ---- * Package: dev-perl/Bio-ASN1-EntrezGene-1.730.0 * Repository: gentoo * Maintainer: sci@gentoo.org perl@gentoo.org * USE: abi_x86_64 amd64 elibc_glibc kernel_linux test userland_GNU * FEATURES: network-sandbox preserve-libs sandbox test userpriv usersandbox >>> Unpacking source... >>> Unpacking Bio-ASN1-EntrezGene-1.73.tar.gz to /var/tmp/portage/dev-perl/Bio-ASN1-EntrezGene-1.730.0/work >>> Source unpacked in /var/tmp/portage/dev-perl/Bio-ASN1-EntrezGene-1.730.0/work >>> Preparing source in /var/tmp/portage/dev-perl/Bio-ASN1-EntrezGene-1.730.0/work/Bio-ASN1-EntrezGene-1.73 ... >>> Source prepared. >>> Configuring source in /var/tmp/portage/dev-perl/Bio-ASN1-EntrezGene-1.730.0/work/Bio-ASN1-EntrezGene-1.73 ... * Using ExtUtils::MakeMaker * perl Makefile.PL PREFIX=/usr INSTALLDIRS=vendor INSTALLMAN3DIR=none DESTDIR=/var/tmp/portage/dev-perl/Bio-ASN1-EntrezGene-1.730.0/image Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::ASN1::EntrezGene Writing MYMETA.yml and MYMETA.json >>> Source configured. >>> Compiling source in /var/tmp/portage/dev-perl/Bio-ASN1-EntrezGene-1.730.0/work/Bio-ASN1-EntrezGene-1.73 ... * emake OTHERLDFLAGS=-O2 -pipe -march=native -fdiagnostics-color=always -frecord-gcc-switches -Wl,--defsym=__gentoo_check_ldflags__=0 -Wl,-O1 -Wl,--as-needed make -j9 -l9 'OTHERLDFLAGS=-O2 -pipe -march=native -fdiagnostics-color=always -frecord-gcc-switches -Wl,--defsym=__gentoo_check_ldflags__=0 -Wl,-O1 -Wl,--as-needed' cp lib/Bio/ASN1/EntrezGene/Indexer.pm blib/lib/Bio/ASN1/EntrezGene/Indexer.pm cp lib/Bio/ASN1/EntrezGene.pm blib/lib/Bio/ASN1/EntrezGene.pm cp lib/Bio/ASN1/Sequence.pm blib/lib/Bio/ASN1/Sequence.pm cp lib/Bio/ASN1/Sequence/Indexer.pm blib/lib/Bio/ASN1/Sequence/Indexer.pm cp lib/Bio/SeqIO/entrezgene.pm blib/lib/Bio/SeqIO/entrezgene.pm >>> Source compiled. >>> Test phase: dev-perl/Bio-ASN1-EntrezGene-1.730.0 * Removing un-needed t/author-eol.t * Removing un-needed t/author-mojibake.t * Removing un-needed t/author-no-tabs.t * Removing un-needed t/author-pod-coverage.t * Removing un-needed t/author-pod-syntax.t * Removing un-needed t/release-*.t * Fixing Manifest * Test::Harness Jobs=9 make -j9 -l9 test TEST_VERBOSE=0 PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t ===( 1;0 0/5 0/? 0/6 1/10 )==================================# # # Test parsers (Bio::ASN1::EntrezGene, Bio::ASN1::Sequence), # parsing and method call: # # # First testing gene parser: ===( 5;0 1/5 0/? 0/6 4/10 )==================================# # # Now testing sequence parser: t/testparser.t ... ok ===( 11;0 1/5 0/? 0/6 )=========================================Can't locate Test/Exception.pm in @INC (you may need to install the Test::Exception module) (@INC contains: t/lib . /var/tmp/portage/dev-perl/Bio-ASN1-EntrezGene-1.730.0/work/Bio-ASN1-EntrezGene-1.73/blib/lib /var/tmp/portage/dev-perl/Bio-ASN1-EntrezGene-1.730.0/work/Bio-ASN1-EntrezGene-1.73/blib/arch /etc/perl /usr/local/lib64/perl5/5.34/x86_64-linux /usr/local/lib64/perl5/5.34 /usr/lib64/perl5/vendor_perl/5.34/x86_64-linux /usr/lib64/perl5/vendor_perl/5.34 /usr/lib64/perl5/5.34/x86_64-linux /usr/lib64/perl5/5.34 /usr/lib64/perl5/vendor_perl/5.32 /usr/lib64/perl5/vendor_perl/5.30.3) at (eval 11) line 2. BEGIN failed--compilation aborted at (eval 11) line 2. BEGIN failed--compilation aborted at /usr/lib64/perl5/vendor_perl/5.34/Bio/Root/Test.pm line 151. Compilation failed in require at t/entrezgene.t line 8. BEGIN failed--compilation aborted at t/entrezgene.t line 8. t/entrezgene.t ... Dubious, test returned 2 (wstat 512, 0x200) No subtests run t/00-compile.t ... ok t/testindexer.t .. ok Test Summary Report ------------------- t/entrezgene.t (Wstat: 512 Tests: 0 Failed: 0) Non-zero exit status: 2 Parse errors: No plan found in TAP output Files=4, Tests=21, 1 wallclock secs ( 0.04 usr 0.01 sys + 0.78 cusr 0.13 csys = 0.96 CPU) Result: FAIL Failed 1/4 test programs. 0/21 subtests failed. make: *** [Makefile:891: test_dynamic] Error 255 * ERROR: dev-perl/Bio-ASN1-EntrezGene-1.730.0::gentoo failed (test phase): * emake failed * * If you need support, post the output of `emerge --info '=dev-perl/Bio-ASN1-EntrezGene-1.730.0::gentoo'`, * the complete build log and the output of `emerge -pqv '=dev-perl/Bio-ASN1-EntrezGene-1.730.0::gentoo'`. * The complete build log is located at '/var/tmp/portage/dev-perl/Bio-ASN1-EntrezGene-1.730.0/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/dev-perl/Bio-ASN1-EntrezGene-1.730.0/temp/environment'. * Working directory: '/var/tmp/portage/dev-perl/Bio-ASN1-EntrezGene-1.730.0/work/Bio-ASN1-EntrezGene-1.73' * S: '/var/tmp/portage/dev-perl/Bio-ASN1-EntrezGene-1.730.0/work/Bio-ASN1-EntrezGene-1.73' # emerge --info Portage 3.0.20 (python 3.9.7-final-0, default/linux/amd64/17.1/desktop/plasma, gcc-11.2.0, glibc-2.33-r1, 5.10.52-gentoo-dist x86_64) ================================================================= System uname: Linux-5.10.52-gentoo-dist-x86_64-Intel-R-_Xeon-R-_CPU_E5-2620_v4_@_2.10GHz-with-glibc2.33 KiB Mem: 16393948 total, 374624 free KiB Swap: 4194268 total, 4117216 free Timestamp of repository gentoo: Sat, 16 Oct 2021 22:36:29 +0000 sh dash 0.5.11.3-r1 ld GNU ld (Gentoo 2.37_p1 p0) 2.37 ccache version 4.3 [disabled] app-shells/bash: 5.1_p8::gentoo dev-java/java-config: 2.3.1::gentoo dev-lang/perl: 5.34.0-r2::gentoo dev-lang/python: 2.7.18_p13::gentoo, 3.7.12_p1::gentoo, 3.8.12_p1::gentoo, 3.9.7_p1::gentoo dev-lang/rust-bin: 1.53.0::gentoo dev-util/ccache: 4.3-r3::gentoo dev-util/cmake: 3.20.5::gentoo sys-apps/baselayout: 2.7::gentoo sys-apps/openrc: 0.43.5::gentoo sys-apps/sandbox: 2.24::gentoo sys-devel/autoconf: 2.13-r1::gentoo, 2.71-r1::gentoo sys-devel/automake: 1.16.4::gentoo sys-devel/binutils: 2.37_p1::gentoo sys-devel/gcc: 10.3.0-r2::gentoo, 11.2.0::gentoo sys-devel/gcc-config: 2.4::gentoo sys-devel/libtool: 2.4.6-r6::gentoo sys-devel/make: 4.3::gentoo sys-kernel/linux-headers: 5.10::gentoo (virtual/os-headers) sys-libs/glibc: 2.33-r1::gentoo Repositories: gentoo location: /bound/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 sync-rsync-verify-max-age: 24 sync-rsync-verify-metamanifest: yes sync-rsync-extra-opts: sync-rsync-verify-jobs: 1 ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe -march=native -fdiagnostics-color=always -frecord-gcc-switches" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php7.3/ext-active/ /etc/php/cgi-php7.3/ext-active/ /etc/php/cli-php7.3/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O2 -pipe -march=native -fdiagnostics-color=always -frecord-gcc-switches" DISTDIR="/bound/distfiles" EMERGE_DEFAULT_OPTS="--complete-graph --with-bdeps=y --keep-going --deep --binpkg-respect-use=y --getbinpkg=y" ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" FCFLAGS="-O2 -pipe -march=native -fdiagnostics-color=always -frecord-gcc-switches" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance cgroup config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch parallel-install pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe -march=native -fdiagnostics-color=always -frecord-gcc-switches" GENTOO_MIRRORS="http://distfiles.gentoo.org" LANG="en_US.utf8" LDFLAGS="-O2 -pipe -march=native -fdiagnostics-color=always -frecord-gcc-switches -Wl,--defsym=__gentoo_check_ldflags__=0 -Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j9 -l9" PKGDIR="/var/cache/binpkgs" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" USE="X a52 aac acl acpi activities alsa amd64 asm bindist bluetooth branding bzip2 cairo caps cdda cdr cli crypt cups dbus declarative dri dts dvd dvdr egl elogind emboss encode exif filecaps flac fortran gdbm gif gles2 gmp gpm graphite gtk gui hardened iconv icu introspection ipv6 jit jpeg kde kipi kwallet lcms libglvnd libnotify libtirpc mad mng mp3 mp4 mpeg multilib ncurses nls nptl objc ogg opengl openmp pam pango pcre pdf plasma png policykit polkit ppds pulseaudio qml qt5 readline sdl seccomp semantic-desktop spell split-usr ssl startup-notification svg tcpd tiff truetype udev udisks unicode upower usb vorbis wayland widgets wxwidgets x264 xattr xcb xml xv xvid xwayland zlib" ABI_X86="32 64" ADA_TARGET="gnat_2021" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx avx2 f16c fma3 mmx mmxext pclmul popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="framebuffer" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-3 php7-4" POSTGRES_TARGETS="postgres12" PYTHON_SINGLE_TARGET="python3_9" PYTHON_TARGETS="python3_9 python3_6 python3_7 python3_8" RUBY_TARGETS="ruby27" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RUSTFLAGS
(ignore the perl noise at the top of the emerge info)
# emerge --info Portage 3.0.20 (python 3.9.6-final-0, default/linux/ppc64/17.0, gcc-11.2.0, glibc-2.33-r1, 5.10.68-gentoo-dist-hardened ppc64) ================================================================= System uname: Linux-5.10.68-gentoo-dist-hardened-ppc64-POWER9_-architected-,_altivec_supported-with-glibc2.33 KiB Mem: 32931448 total, 5623476 free KiB Swap: 67108860 total, 66982428 free Timestamp of repository gentoo: Sat, 16 Oct 2021 23:51:26 +0000 sh bash 5.1_p8 ld GNU ld (Gentoo 2.37_p1 p0) 2.37 app-shells/bash: 5.1_p8::gentoo dev-java/java-config: 2.3.1::gentoo dev-lang/perl: 5.34.0-r2::gentoo dev-lang/python: 3.9.6_p2::gentoo dev-lang/rust-bin: 1.53.0::gentoo dev-util/cmake: 3.20.5::gentoo sys-apps/baselayout: 2.7::gentoo sys-apps/openrc: 0.43.5::gentoo sys-apps/sandbox: 2.24::gentoo sys-devel/autoconf: 2.69-r5::gentoo, 2.71-r1::gentoo sys-devel/automake: 1.16.4::gentoo sys-devel/binutils: 2.37_p1::gentoo sys-devel/gcc: 11.2.0::gentoo sys-devel/gcc-config: 2.4::gentoo sys-devel/libtool: 2.4.6-r6::gentoo sys-devel/make: 4.3::gentoo sys-kernel/linux-headers: 5.10::gentoo (virtual/os-headers) sys-libs/glibc: 2.33-r1::gentoo Repositories: gentoo location: /var/db/repos/gentoo sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 sync-rsync-verify-jobs: 1 sync-rsync-verify-max-age: 24 sync-rsync-extra-opts: sync-rsync-verify-metamanifest: yes ACCEPT_KEYWORDS="ppc64" ACCEPT_LICENSE="@FREE" CBUILD="powerpc64-unknown-linux-gnu" CFLAGS="-O2 -pipe -frecord-gcc-switches -fdiagnostics-show-option" CHOST="powerpc64-unknown-linux-gnu" CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O2 -pipe -frecord-gcc-switches -fdiagnostics-show-option" DISTDIR="/var/cache/distfiles" EMERGE_DEFAULT_OPTS="--nospinner --ask-enter-invalid --jobs=4 --load-average 10 --quiet-build --keep-going --with-bdeps=y --complete-graph --deep" ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" FCFLAGS="-O2 -pipe -frecord-gcc-switches -fdiagnostics-show-option" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox multilib-strict network-sandbox news parallel-fetch parallel-install pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe -frecord-gcc-switches -fdiagnostics-show-option" GENTOO_MIRRORS="https://gentoo.osuosl.org/" LANG="C.UTF8" LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0" MAKEOPTS="-j12 -l10" PKGDIR="/var/tmp/portage/ppc32" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" USE="acl big-endian bzip2 cli crypt dbus dri elogind fortran gdbm ibm iconv ipv6 libglvnd ncurses nls nptl openmp pam pcre ppc64 readline seccomp split-usr ssl tcpd unicode xattr zlib" ABI_PPC="64" ADA_TARGET="gnat_2019" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-3 php7-4" POSTGRES_TARGETS="postgres12 postgres13" PYTHON_SINGLE_TARGET="python3_9" PYTHON_TARGETS="python3_9" RUBY_TARGETS="ruby27" USERLAND="GNU" VIDEO_CARDS="fbdev mga nv r128 radeon dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RUSTFLAGS
*** Bug 828475 has been marked as a duplicate of this bug. ***
