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Bug 805995 - dev-python/pytables-3.6.1-r1: fails tests: tables.tests.test_index_backcompat.Indexes2_*
Summary: dev-python/pytables-3.6.1-r1: fails tests: tables.tests.test_index_backcompat...
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Python Gentoo Team
URL: https://github.com/PyTables/PyTables/...
Whiteboard:
Keywords: TESTFAILURE
Depends on:
Blocks:
 
Reported: 2021-08-01 14:07 UTC by Rolf Eike Beer
Modified: 2021-11-20 07:44 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (dev-python_pytables-3.6.1_use_ejGOt,839.74 KB, text/plain)
2021-08-01 14:07 UTC, Rolf Eike Beer
Details

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Description Rolf Eike Beer archtester 2021-08-01 14:07:59 UTC
Created attachment 729285 [details]
build.log

All of this kind:

ERROR: test00_version (tables.tests.test_index_backcompat.Indexes2_0TestCase)
Checking index version.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/var/tmp/portage/dev-python/pytables-3.6.1/work/tables-3.6.1-python3_9/lib/tables/tests/test_index_backcompat.py", line 18, in setUp
    self.sl = self.table1.cols.var1.index.slicesize
AttributeError: 'UnImplemented' object has no attribute 'cols'

Portage 3.0.20 (python 3.9.6-final-0, default/linux/sparc/17.0, gcc-9.3.0, glibc-2.33-r1, 5.13.0-gentoo-r1-sparc64 sparc64)
=================================================================
System uname: Linux-5.13.0-gentoo-r1-sparc64-sparc64-sun4v-with-glibc2.33
KiB Mem:    33076584 total,  11825408 free
KiB Swap:          0 total,         0 free
Timestamp of repository gentoo: Sun, 01 Aug 2021 00:15:01 +0000
Head commit of repository gentoo: 6b04b1b76282e2ff00762239ad122467c5517e34
sh bash 5.1_p8
ld GNU ld (Gentoo 2.36.1 p3) 2.36.1
app-shells/bash:          5.1_p8::gentoo
dev-lang/perl:            5.34.0-r1::gentoo
dev-lang/python:          2.7.18_p11::gentoo, 3.8.11::gentoo, 3.9.6::gentoo, 3.10.0_beta4::gentoo
dev-util/cmake:           3.21.0::gentoo
dev-util/pkgconfig:       0.29.2::gentoo
sys-apps/baselayout:      2.7-r3::gentoo
sys-apps/openrc:          0.43.3::gentoo
sys-apps/sandbox:         2.24::gentoo
sys-devel/autoconf:       2.13-r1::gentoo, 2.69-r5::gentoo
sys-devel/automake:       1.16.3-r1::gentoo
sys-devel/binutils:       2.36.1-r1::gentoo
sys-devel/gcc:            9.3.0-r2::gentoo, 11.1.0-r2::gentoo
sys-devel/gcc-config:     2.4::gentoo
sys-devel/libtool:        2.4.6-r6::gentoo
sys-devel/make:           4.3::gentoo
sys-kernel/linux-headers: 5.13::gentoo (virtual/os-headers)
sys-libs/glibc:           2.33-r1::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.de.gentoo.org/gentoo-portage/
    priority: -1000
    sync-rsync-extra-opts: 
    sync-rsync-verify-metamanifest: yes
    sync-rsync-verify-jobs: 1
    sync-rsync-verify-max-age: 24

qt
    location: /var/lib/layman/qt
    masters: gentoo
    priority: 50

ACCEPT_KEYWORDS="sparc ~sparc"
ACCEPT_LICENSE="*"
CBUILD="sparc-unknown-linux-gnu"
CFLAGS="-O2 -mcpu=niagara2 -pipe"
CHOST="sparc-unknown-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-O2 -mcpu=niagara2 -pipe"
DISTDIR="/usr/portage/distfiles"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS=""
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS=""
GENTOO_MIRRORS="ftp://ftp.wh2.tu-dresden.de/pub/mirrors/gentoo ftp://ftp.join.uni-muenster.de/pub/linux/distributions/gentoo"
LANG="en_US.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j20 -l40"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="acl big-endian bzip2 cli crypt dri fortran gdbm iconv ipv6 libglvnd libtirpc llvm-libunwind ncurses nls nptl openmp pam pcre readline sparc split-usr ssl tcpd unicode xattr zlib" ADA_TARGET="gnat_2018" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-3 php7-4" POSTGRES_TARGETS="postgres12 postgres13" PYTHON_SINGLE_TARGET="python3_9" PYTHON_TARGETS="python3_9" RUBY_TARGETS="ruby26" USERLAND="GNU" VIDEO_CARDS="fbdev glint mga r128 radeon dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RUSTFLAGS
Comment 1 Sam James archtester gentoo-dev Security 2021-09-06 00:11:17 UTC
Same on ppc64.
Comment 2 Larry the Git Cow gentoo-dev 2021-11-19 13:16:50 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=76886ed3b4ebda4fd6b57435ee43a6dd6b58af61

commit 76886ed3b4ebda4fd6b57435ee43a6dd6b58af61
Author:     Sam James <sam@gentoo.org>
AuthorDate: 2021-11-19 13:16:26 +0000
Commit:     Sam James <sam@gentoo.org>
CommitDate: 2021-11-19 13:16:26 +0000

    dev-python/pytables: depend on older hdf5
    
    Closes: https://bugs.gentoo.org/805995
    Reported-by: Rolf Eike Beer <eike@sf-mail.de>
    Signed-off-by: Sam James <sam@gentoo.org>

 .../pytables/{pytables-3.6.1.ebuild => pytables-3.6.1-r1.ebuild}     | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)
Comment 3 Larry the Git Cow gentoo-dev 2021-11-20 06:44:43 UTC
The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a9a3566f532b65a95141b1e5a9f013cb5c3df009

commit a9a3566f532b65a95141b1e5a9f013cb5c3df009
Author:     Sam James <sam@gentoo.org>
AuthorDate: 2021-11-20 06:42:53 +0000
Commit:     Sam James <sam@gentoo.org>
CommitDate: 2021-11-20 06:42:53 +0000

    dev-python/pytables: skip some known-failing tests on big endian
    
    Use Debian's patch for this.
    
    Bug: https://bugs.gentoo.org/805995
    Signed-off-by: Sam James <sam@gentoo.org>

 ...tables-3.6.1-big-endian-tests-skip-subset.patch | 36 ++++++++++++++++++++++
 dev-python/pytables/pytables-3.6.1-r1.ebuild       |  1 +
 2 files changed, 37 insertions(+)
Comment 4 Agostino Sarubbo gentoo-dev 2021-11-20 07:06:34 UTC
ci has reproduced this issue with version 3.6.1-r1 - Updating summary.
Comment 5 Sam James archtester gentoo-dev Security 2021-11-20 07:08:13 UTC
(In reply to Agostino Sarubbo from comment #4)
> ci has reproduced this issue with version 3.6.1-r1 - Updating summary.

wait, really? On amd64? Can you give the logs please?
Comment 6 Larry the Git Cow gentoo-dev 2021-11-20 07:44:26 UTC
The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c7501a1096a712db846458590561931aea97a94d

commit c7501a1096a712db846458590561931aea97a94d
Author:     Sam James <sam@gentoo.org>
AuthorDate: 2021-11-20 07:44:08 +0000
Commit:     Sam James <sam@gentoo.org>
CommitDate: 2021-11-20 07:44:19 +0000

    dev-python/pytables: fix HDF5 upper bound
    
    Bug: https://bugs.gentoo.org/805995
    Signed-off-by: Sam James <sam@gentoo.org>

 .../pytables/{pytables-3.6.1-r1.ebuild => pytables-3.6.1-r2.ebuild}     | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)