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Bug 805974 - dev-python/numpy-1.21.1: test_nonzero_onedim fails with bus error
Summary: dev-python/numpy-1.21.1: test_nonzero_onedim fails with bus error
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Python Gentoo Team
URL:
Whiteboard:
Keywords: TESTFAILURE
Depends on:
Blocks: unaligned-access
  Show dependency tree
 
Reported: 2021-08-01 13:59 UTC by Rolf Eike Beer
Modified: 2021-10-24 20:52 UTC (History)
3 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (dev-python_numpy-1.21.1_use_q6TFJ.xz,100.66 KB, application/x-xz)
2021-08-01 14:00 UTC, Rolf Eike Beer
Details

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Description Rolf Eike Beer archtester 2021-08-01 13:59:31 UTC
Portage 3.0.20 (python 3.9.6-final-0, default/linux/sparc/17.0, gcc-10.3.0, glibc-2.33-r1, 5.13.0-gentoo-r1-sparc64 sparc64)
=================================================================
System uname: Linux-5.13.0-gentoo-r1-sparc64-sparc64-sun4v-with-glibc2.33
KiB Mem:    33076584 total,   8559624 free
KiB Swap:          0 total,         0 free
Timestamp of repository gentoo: Sun, 01 Aug 2021 00:15:01 +0000
Head commit of repository gentoo: 6b04b1b76282e2ff00762239ad122467c5517e34
sh bash 5.1_p8
ld GNU ld (Gentoo 2.35.2 p1) 2.35.2
app-shells/bash:          5.1_p8::gentoo
dev-lang/perl:            5.34.0::gentoo
dev-lang/python:          2.7.18_p11::gentoo, 3.7.11::gentoo, 3.8.11::gentoo, 3.9.6::gentoo
dev-util/cmake:           3.18.5::gentoo
sys-apps/baselayout:      2.7::gentoo
sys-apps/openrc:          0.42.1-r1::gentoo
sys-apps/sandbox:         2.24::gentoo
sys-devel/autoconf:       2.13-r1::gentoo, 2.69-r5::gentoo
sys-devel/automake:       1.16.3-r1::gentoo
sys-devel/binutils:       2.35.2::gentoo
sys-devel/gcc:            10.3.0::gentoo
sys-devel/gcc-config:     2.4::gentoo
sys-devel/libtool:        2.4.6-r6::gentoo
sys-devel/make:           4.3::gentoo
sys-kernel/linux-headers: 5.10::gentoo (virtual/os-headers)
sys-libs/glibc:           2.33-r1::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.de.gentoo.org/gentoo-portage/
    priority: -1000
    sync-rsync-verify-max-age: 24
    sync-rsync-verify-jobs: 1
    sync-rsync-verify-metamanifest: yes
    sync-rsync-extra-opts: 

qt
    location: /var/lib/layman/qt
    masters: gentoo
    priority: 50

ACCEPT_KEYWORDS="sparc"
ACCEPT_LICENSE="* -@EULA"
CBUILD="sparc-unknown-linux-gnu"
CFLAGS="-O2 -mcpu=niagara2 -pipe -Wcast-align"
CHOST="sparc-unknown-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt /var/qmail/alias /var/qmail/control"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -mcpu=niagara2 -pipe -Wcast-align"
DISTDIR="/usr/portage/distfiles"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS=""
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS=""
GENTOO_MIRRORS="ftp://ftp.wh2.tu-dresden.de/pub/mirrors/gentoo ftp://ftp.join.uni-muenster.de/pub/linux/distributions/gentoo"
LANG="en_US.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j20 -l40"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="acl big-endian bzip2 cli crypt dri fortran gdbm iconv ipv6 libglvnd libtirpc llvm-libunwind ncurses nls nptl openmp pam pcre readline sparc split-usr ssl tcpd unicode xattr zlib" ADA_TARGET="gnat_2018" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-3 php7-4" POSTGRES_TARGETS="postgres12 postgres13" PYTHON_SINGLE_TARGET="python3_9" PYTHON_TARGETS="python3_9" RUBY_TARGETS="ruby26" USERLAND="GNU" VIDEO_CARDS="fbdev glint mga r128 radeon dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RUSTFLAGS
Comment 1 Rolf Eike Beer archtester 2021-08-01 14:00:01 UTC
Created attachment 729282 [details]
build.log
Comment 2 Michał Górny archtester Gentoo Infrastructure gentoo-dev Security 2021-08-01 20:52:50 UTC
Is this a regression compared to 1.20.3-r1?
Comment 3 Rolf Eike Beer archtester 2021-08-02 08:11:37 UTC
Until now I only have see the Fortran tests failing.
Comment 4 Michał Górny archtester Gentoo Infrastructure gentoo-dev Security 2021-08-02 08:28:07 UTC
`Architecture: unsupported` doesn't bring much hope.
Comment 5 Rolf Eike Beer archtester 2021-10-24 19:57:34 UTC
The patch committed a few hours ago by upstream can be applied against 1.21.2 without problems and fixes the tests there for me.
Comment 6 Michał Górny archtester Gentoo Infrastructure gentoo-dev Security 2021-10-24 20:10:29 UTC
I'm on it.  Please give me some time to do at least the minimal testing.
Comment 7 Larry the Git Cow gentoo-dev 2021-10-24 20:52:04 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=fb1e7ebd3b199eadab7869aca983bc5e8b3ead85

commit fb1e7ebd3b199eadab7869aca983bc5e8b3ead85
Author:     Michał Górny <mgorny@gentoo.org>
AuthorDate: 2021-10-24 20:50:38 +0000
Commit:     Michał Górny <mgorny@gentoo.org>
CommitDate: 2021-10-24 20:52:01 +0000

    dev-python/numpy: Backport unaligned access fix
    
    Closes: https://bugs.gentoo.org/805974
    Signed-off-by: Michał Górny <mgorny@gentoo.org>

 .../numpy/files/numpy-1.21.3-unaligned-array.patch | 45 ++++++++++++++++++++++
 ...{numpy-1.21.1.ebuild => numpy-1.21.1-r1.ebuild} |  1 +
 ...{numpy-1.21.3.ebuild => numpy-1.21.2-r1.ebuild} |  1 +
 ...{numpy-1.21.2.ebuild => numpy-1.21.3-r1.ebuild} |  1 +
 4 files changed, 48 insertions(+)