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Bug 805587 - app-text/xmlto-0.0.28-r6: Failed running 'automake': version mismatch. This is Automake 1.16.4
Summary: app-text/xmlto-0.0.28-r6: Failed running 'automake': version mismatch. This ...
Status: RESOLVED OBSOLETE
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Sam James
URL:
Whiteboard:
Keywords:
Depends on:
Blocks: 782985
  Show dependency tree
 
Reported: 2021-08-01 00:16 UTC by Sergei Trofimovich (RETIRED)
Modified: 2021-08-01 07:59 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments

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Description Sergei Trofimovich (RETIRED) gentoo-dev 2021-08-01 00:16:05 UTC
* xmlto-0.0.28.tar.bz2 BLAKE2B SHA512 size ;-) ...                                                                                                                                                           [ ok ]
>>> Unpacking source...
>>> Unpacking xmlto-0.0.28.tar.bz2 to /tmp/portage/app-text/xmlto-0.0.28-r6/work
>>> Source unpacked in /tmp/portage/app-text/xmlto-0.0.28-r6/work
/tmp/portage/app-text/xmlto-0.0.28-r6/work/xmlto-0.0.28 /tmp/portage/app-text/xmlto-0.0.28-r6/work
Инициализирован пустой репозиторий Git в /tmp/portage/app-text/xmlto-0.0.28-r6/work/xmlto-0.0.28/.git/
/tmp/portage/app-text/xmlto-0.0.28-r6/work
>>> Preparing source in /tmp/portage/app-text/xmlto-0.0.28-r6/work/xmlto-0.0.28 ...
 * Applying xmlto-0.0.22-format_fo_passivetex_check.patch ...
patching file format/fo/dvi
Hunk #1 succeeded at 11 with fuzz 2.
patching file format/fo/pdf
Hunk #1 succeeded at 13 with fuzz 2.
patching file format/fo/ps
Hunk #1 succeeded at 8 with fuzz 2.                                                                                                                                                                           [ ok ]
 * Applying xmlto-0.0.28-allow-links.patch ...                                                                                                                                                                [ ok ]
 * Running eautoreconf in '/tmp/portage/app-text/xmlto-0.0.28-r6/work/xmlto-0.0.28' ...
 * Running 'aclocal' ...                                                                                                                                                                                      [ ok ]
 * This package has a configure.in file which has long been deprecated.  Please
 * update it to use configure.ac instead as newer versions of autotools will die
 * when it finds this file.  See https://bugs.gentoo.org/426262 for details.
 * Running 'autoconf --force' ...                                                                                                                                                                             [ ok ]
 * Running 'autoheader' ...                                                                                                                                                                                   [ ok ]
 * Running 'automake --add-missing --copy --force-missing' ...                                                                                                                                                [ !! ]

 * Failed running 'automake'!
 *
 * Include in your bug report the contents of:
 *
 *   /tmp/portage/app-text/xmlto-0.0.28-r6/temp/automake.out

 * ERROR: app-text/xmlto-0.0.28-r6::gentoo failed (prepare phase):
 *   Failed running 'automake'!
 *
 * Call stack:
 *     ebuild.sh, line  127:  Called src_prepare
 *   environment, line 1651:  Called eautoreconf
 *   environment, line  922:  Called eautomake
 *   environment, line  876:  Called autotools_run_tool 'automake' '--add-missing' '--copy' '--force-missing'
 *   environment, line  629:  Called die
 * The specific snippet of code:
 *           die "Failed running '${1}'!";
 *
 * If you need support, post the output of `emerge --info '=app-text/xmlto-0.0.28-r6::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=app-text/xmlto-0.0.28-r6::gentoo'`.
 * The complete build log is located at '/gentoo/build-logs/app-text:xmlto-0.0.28-r6:20210801-001211.log'.
 * For convenience, a symlink to the build log is located at '/tmp/portage/app-text/xmlto-0.0.28-r6/temp/build.log'.
 * The ebuild environment file is located at '/tmp/portage/app-text/xmlto-0.0.28-r6/temp/environment'.
 * Working directory: '/tmp/portage/app-text/xmlto-0.0.28-r6/work/xmlto-0.0.28'
 * S: '/tmp/portage/app-text/xmlto-0.0.28-r6/work/xmlto-0.0.28'

$ cat /tmp/portage/app-text/xmlto-0.0.28-r6/temp/automake.out
***** automake *****
***** PWD: /tmp/portage/app-text/xmlto-0.0.28-r6/work/xmlto-0.0.28
***** automake --add-missing --copy --force-missing

automake-1.16: warning: autoconf input should be named 'configure.ac', not 'configure.in'
configure.in:3: error: version mismatch.  This is Automake 1.16.4,
configure.in:3: but the definition used by this AM_INIT_AUTOMAKE
configure.in:3: comes from Automake 1.13.4.  You should recreate
configure.in:3: aclocal.m4 with aclocal and run automake again.
automake-1.16: warning: autoconf input should be named 'configure.ac', not 'configure.in'

=================================================================
                        Package Settings
=================================================================

sys-devel/automake-1.13.4-r2::gentoo was built with the following:
USE="" ABI_X86="(64)"


sys-devel/automake-1.16.4::gentoo was built with the following:
USE="-test" ABI_X86="(64)"
FEATURES="clean-logs binpkg-logs qa-unresolved-soname-deps sandbox protect-owned network-sandbox ccache splitdebug binpkg-dostrip xattr distlocks usersandbox usersync news userpriv unmerge-orphans fixlafiles userfetch sign fail-clean assume-digests unmerge-logs ipc-sandbox merge-sync binpkg-docompress unknown-features-warn strict sfperms pid-sandbox ebuild-locks preserve-libs parallel-fetch multilib-strict config-protect-if-modified"
Comment 1 Sam James archtester Gentoo Infrastructure gentoo-dev Security 2021-08-01 00:25:34 UTC
Could you please share emerge --info autoconf?
Comment 2 Ionen Wolkens gentoo-dev 2021-08-01 06:04:16 UTC
Yes, this is giving unmasked autoconf-2.71 vibes, if so it'd be bug #782985.

And I can reproduce with xmlto as well.
Comment 3 Sergei Trofimovich (RETIRED) gentoo-dev 2021-08-01 07:49:09 UTC
# emerge --info autoconf
!!! Section 'co' in repos.conf has location attribute set to nonexistent directory: '/co'
WARNING: One or more repositories have missing repo_name entries:

        /co/profiles/repo_name

NOTE: Each repo_name entry should be a plain text file containing a
unique name for the repository on the first line.


Portage 3.0.20 (python 3.9.6-final-0, default/linux/amd64/17.1, gcc-11.2.0, glibc-2.33-r5, 5.14.0-rc3-00141-g4669e13cd67f x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-5.14.0-rc3-00141-g4669e13cd67f-x86_64-AMD_Ryzen_9_5950X_16-Core_Processor-with-glibc2.33
KiB Mem:   131817976 total,  80501288 free
KiB Swap:  201326588 total, 201326588 free
sh bash 5.1_p8
ld GNU ld (Gentoo 2.37 p2) 2.37
ccache version 4.3 [enabled]
app-shells/bash:          5.1_p8::gentoo
dev-lang/perl:            5.34.0-r1::gentoo
dev-lang/python:          3.9.6::gentoo, 3.10.0_beta4::gentoo
dev-lang/rust:            1.53.0::gentoo
dev-util/ccache:          4.3-r3::gentoo
dev-util/cmake:           3.21.1::gentoo
sys-apps/baselayout:      2.7-r3::gentoo
sys-apps/sandbox:         2.24::gentoo
sys-devel/autoconf:       2.13-r1::gentoo, 2.69-r5::gentoo, 2.71::gentoo
sys-devel/automake:       1.13.4-r2::gentoo, 1.16.4::gentoo
sys-devel/binutils:       2.37::gentoo
sys-devel/gcc:            11.2.0::gentoo
sys-devel/gcc-config:     2.4::gentoo
sys-devel/libtool:        2.4.6-r6::gentoo
sys-devel/make:           4.3::gentoo
sys-kernel/linux-headers: 5.13::gentoo (virtual/os-headers)
sys-libs/glibc:           2.33-r5::gentoo
Repositories:

gentoo
    location: /bound/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    sync-rsync-extra-opts:
    sync-rsync-verify-max-age: 24
    sync-rsync-verify-jobs: 1
    sync-rsync-verify-metamanifest: yes

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe -fdiagnostics-show-option -frecord-gcc-switches"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-O2 -pipe"
DISTDIR="/bound/distfiles"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs ccache clean-logs config-protect-if-modified distlocks ebuild-locks fail-clean fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict stricter unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="ru_RU.UTF-8"
LC_ALL=""
LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu"
MAKEOPTS="-j16"
PKGDIR="/var/cache/binpkgs"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/dev/shm"
USE="X acl amd64 bzip2 cli crypt cups dbus dot dri fontconfig fortran gdbm gtk harfbuzz iconv ipv6 jit jpeg libglvnd libtirpc multilib ncurses nls nptl openmp pam pcre pcre16 pcre32 png policykit pulseaudio readline seccomp split-usr ssl systemd tcpd text truetype unicode xattr xvfb zlib" ABI_X86="64" ADA_TARGET="gnat_2018" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-3 php7-4" POSTGRES_TARGETS="postgres12 postgres13" PYTHON_SINGLE_TARGET="python3_9" PYTHON_TARGETS="python3_9" RUBY_TARGETS="ruby26" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RUSTFLAGS

=================================================================
                        Package Settings
=================================================================

sys-devel/autoconf-2.13-r1::gentoo was built with the following:
USE="" ABI_X86="(64)"


sys-devel/autoconf-2.69-r5::gentoo was built with the following:
USE="-emacs" ABI_X86="(64)"


sys-devel/autoconf-2.71::gentoo was built with the following:
USE="-emacs" ABI_X86="(64)"
Comment 4 Sam James archtester Gentoo Infrastructure gentoo-dev Security 2021-08-01 07:53:35 UTC
I guess I'll close this for now, just like we've closed the others, as it's caused by unmasking autoconf:2.71 locally. Nothing I can do for xmlto AFAIK.

We still need somebody to report the bug upstream with a reproducer.
Comment 5 Sergei Trofimovich (RETIRED) gentoo-dev 2021-08-01 07:59:49 UTC
apologies for the noise