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Bug 773982 - dev-util/bazel: Dynamically linked bazel use host libstdc++ on gentoo prefix
Summary: dev-util/bazel: Dynamically linked bazel use host libstdc++ on gentoo prefix
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: AMD64 Linux
: Normal normal (vote)
Assignee: Zac Medico
URL:
Whiteboard:
Keywords: InVCS
Depends on:
Blocks:
 
Reported: 2021-03-02 14:37 UTC by Wu Yiyang
Modified: 2021-03-06 09:00 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build log (build.log,189.10 KB, application/octet-stream)
2021-03-02 14:38 UTC, Wu Yiyang
Details

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Description Wu Yiyang 2021-03-02 14:37:52 UTC
This is a prefix issue
Dynamically linked bazel use host libstdc++ at build time on gentoo prefix and may cause failure on old host machines.
This phenomenon can be seen in build.log

Reproducible: Always

Steps to Reproduce:
1. bootstrap a gentoo prefix on an amd64 linux whose libstdc++ is old ,typically centos 7
2. emerge --ask --verbose =dev-util/bazel-3.2.0
3.
Actual Results:  
Extracting Bazel installation...
Starting local Bazel server and connecting to it...
Server crashed during startup. Now printing /dev/shm/portage/dev-util/bazel-3.2.0/temp/generate_bash_completion.r2uAnPA0/root/b7a29783a433df53041e5cb84f80f59e/server/jvm.out
JNI initialization failed: /dev/shm/portage/dev-util/bazel-3.2.0/temp/generate_bash_completion.r2uAnPA0/root/install/a825e7dd54a9b87220bf6fb6a15c2085/libunix.so: /lib64/libstdc++.so.6: version `GLIBCXX_3.4.21' not found (required by /dev/shm/portage/dev-util/bazel-3.2.0/temp/generate_bash_completion.r2uAnPA0/root/install/a825e7dd54a9b87220bf6fb6a15c2085/libunix.so).  Possibly your installation has been corrupted.

Expected Results:  
bazel compiled and can build things (including itself) normally

A solution : statically link libstdc++ to bazel.

Many issue related can be found about building or cross compiling tensorflow, such as https://github.com/tensorflow/tensorflow/issues/38718
Comment 1 Wu Yiyang 2021-03-02 14:38:42 UTC
Created attachment 689076 [details]
build log
Comment 2 Wu Yiyang 2021-03-02 14:39:15 UTC
Portage 3.0.14 (python 3.8.7-final-0, default/linux/amd64/17.1/no-multilib/prefix/kernel-3.2+, gcc-8.4.0, glibc-2.32-r7, 3.10.0-957.el7.x86_64 x86_64)
=================================================================
System uname: Linux-3.10.0-957.el7.x86_64-x86_64-Intel-R-_Xeon-R-_Gold_6240_CPU_@_2.60GHz-with-glibc2.2.5
KiB Mem:   263549216 total,  79365012 free
KiB Swap:    4194300 total,   4194300 free
Timestamp of repository gentoo: Sun, 07 Feb 2021 05:30:01 +0000
Head commit of repository gentoo: 86324186f7bb334aeb86b68535a9951ddd75f5e4
sh bash 5.1_p4
ld GNU ld (Gentoo 2.35.1 p2) 2.35.1
app-shells/bash:          5.1_p4::gentoo
dev-java/java-config:     2.3.1::gentoo
dev-lang/perl:            5.32.0-r1::gentoo
dev-lang/python:          2.7.18-r6::gentoo, 3.8.7-r1::gentoo, 3.9.1-r1::gentoo
dev-util/cmake:           3.19.4::gentoo
sys-apps/baselayout:      2.7-r1::gentoo
sys-apps/sandbox:         2.20::gentoo
sys-devel/autoconf:       2.69-r5::gentoo
sys-devel/automake:       1.16.3-r1::gentoo
sys-devel/binutils:       2.35.1-r1::gentoo
sys-devel/gcc:            8.4.0-r2::gentoo, 10.2.0-r5::gentoo
sys-devel/gcc-config:     2.3.3::gentoo
sys-devel/libtool:        2.4.6-r6::gentoo
sys-devel/make:           4.3::gentoo
sys-kernel/linux-headers: 5.10::gentoo (virtual/os-headers)
sys-libs/glibc:           2.32-r7::gentoo
Repositories:

gentoo
    location: /dev/shm/gentoo-repos/gentoo
    sync-type: rsync
    sync-uri: rsync://mirrors.bfsu.edu.cn/gentoo-portage
    priority: 50
    sync-rsync-verify-jobs: 1
    sync-rsync-extra-opts: 
    sync-rsync-verify-metamanifest: no
    sync-rsync-verify-max-age: 24

local
    location: /data/home/dluser1/xueying/common_files/gentoo-localrepo
    masters: gentoo
    priority: 50

science
    location: /dev/shm/gentoo-repos/science
    masters: gentoo
    priority: 50

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="@FREE"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -mtune=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/data/home/dluser1/xueying/gentoo/etc /etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/data/home/dluser1/xueying/gentoo/etc/env.d /data/home/dluser1/xueying/gentoo/etc/gentoo-release /etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-march=native -mtune=native -O2 -pipe"
DISTDIR="/data/home/dluser1/xueying/common_files/distfiles"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles force-prefix ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sfperms strict unknown-features-warn unmerge-logs unmerge-orphans unprivileged"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="https://mirrors.bfsu.edu.cn/gentoo"
LANG="zh_CN.UTF-8"
LC_ALL="zh_CN.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j 72 -l 72"
PKGDIR="/data/home/dluser1/xueying/common_files/binpkg"
PORTAGE_CONFIGROOT="/data/home/dluser1/xueying/gentoo/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/dev/shm"
USE="acl amd64 berkdb bzip2 cli crypt dri fortran gdbm iconv ipv6 libglvnd libtirpc ncurses nls nptl openmp pcre prefix readline seccomp split-usr ssl tcpd unicode zlib" ABI_X86="64" ADA_TARGET="gnat_2018" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2 aes avx avx2 avx512bw avx512cd avx512dq avx512f avx512vl f16c fma3 pclmul popcnt rdrand sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="void" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-3 php7-4" POSTGRES_TARGETS="postgres10 postgres11" PYTHON_SINGLE_TARGET="python3_8" PYTHON_TARGETS="python3_8" RUBY_TARGETS="ruby26" USERLAND="GNU" VIDEO_CARDS="dummy" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Comment 3 Larry the Git Cow gentoo-dev 2021-03-06 08:55:56 UTC
The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c10d98823936063e535edf7e28534314bb22a083

commit c10d98823936063e535edf7e28534314bb22a083
Author:     Yiyang Wu <xgreenlandforwyy@gmail.com>
AuthorDate: 2021-03-02 14:58:28 +0000
Commit:     Zac Medico <zmedico@gentoo.org>
CommitDate: 2021-03-06 08:55:50 +0000

    dev-util/bazel: enable statically linked libstdc++ for gentoo prefix
    
    Bug: https://bugs.gentoo.org/773982
    Package-Manager: Portage-3.0.16, Repoman-3.0.2
    Signed-off-by: Yiyang Wu <xgreenlandforwyy@gmail.com>
    Signed-off-by: Zac Medico <zmedico@gentoo.org>

 dev-util/bazel/bazel-3.2.0.ebuild | 8 ++++++--
 1 file changed, 6 insertions(+), 2 deletions(-)