x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../RNAlib/H/ -O2 -pipe -march=native -fno-diagnostics-color -c thermo.c x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../RNAlib/H/ -O2 -pipe -march=native -fno-diagnostics-color -c utils.c x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I. -I.. -I../RNAlib/H/ -O2 -pipe -march=native -fno-diagnostics-color -c ExpString.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o miranda miranda.o output.o scan.o seqio.o swat.o pairs.o thermo.o utils.o ExpString.o ../RNAlib/libRNA.a -lm -lm /usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: output.o:(.bss+0x28): multiple definition of `score_threshold'; miranda.o:(.bss+0x28): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: output.o:(.bss+0x20): multiple definition of `energy_threshold'; miranda.o:(.bss+0x20): first defined here ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.1_no-multilib-libressl_science-20201116-220441 ------------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-10.2.0 * /usr/lib/llvm/11 11.0.0 Available Python interpreters, in order of preference: [1] python3.7 [2] python3.9 (fallback) [3] python3.8 (fallback) [4] python2.7 (fallback) The following VMs are available for generation-2: *) AdoptOpenJDK 8.272_p10 [openjdk-bin-8] Available Java Virtual Machines: [1] openjdk-bin-8 system-vm The Glorious Glasgow Haskell Compilation System, version 8.8.4 timestamp(s) of HEAD at this tinderbox image: /var/db/repos/gentoo Thu Nov 19 02:35:38 PM UTC 2020 /var/db/repos/libressl Sat Nov 7 03:06:11 PM UTC 2020 emerge -qpvO sci-biology/miranda [ebuild N ] sci-biology/miranda-3.3a
Created attachment 673165 [details] emerge-info.txt
Created attachment 673168 [details] emerge-history.txt
Created attachment 673171 [details] environment
Created attachment 673174 [details] etc.portage.tbz2
Created attachment 673177 [details] logs.tbz2
Created attachment 673180 [details] sci-biology:miranda-3.3a:20201119-153055.log
Created attachment 673183 [details] temp.tbz2
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/proj/sci.git/commit/?id=db54d87b772d63b32065d310116ca6396bbc2b2b commit db54d87b772d63b32065d310116ca6396bbc2b2b Author: Jakov Smolic <jakov.smolic@sartura.hr> AuthorDate: 2021-02-20 21:10:43 +0000 Commit: Jakov Smolic <jakov.smolic@sartura.hr> CommitDate: 2021-02-20 21:57:41 +0000 sci-biology/miranda: Port to EAPI 7 Closes: https://bugs.gentoo.org/755566 Signed-off-by: Jakov Smolic <jakov.smolic@sartura.hr> sci-biology/miranda/miranda-3.3a.ebuild | 14 +++++++++----- 1 file changed, 9 insertions(+), 5 deletions(-)
