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Bug 750587 - sci-biology/vcftools-0.1.14 : * Failed Running autoconf !
Summary: sci-biology/vcftools-0.1.14 : * Failed Running autoconf !
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks: autoconf-2.7x
  Show dependency tree
 
Reported: 2020-10-21 16:53 UTC by Toralf Förster
Modified: 2021-01-10 13:15 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,17.55 KB, text/plain)
2020-10-21 16:53 UTC, Toralf Förster
Details
autoconf.out (autoconf.out,467 bytes, text/plain)
2020-10-21 16:53 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,364.57 KB, text/plain)
2020-10-21 16:53 UTC, Toralf Förster
Details
environment (environment,113.37 KB, text/plain)
2020-10-21 16:53 UTC, Toralf Förster
Details
etc.portage.tbz2 (etc.portage.tbz2,30.34 KB, application/x-bzip)
2020-10-21 16:53 UTC, Toralf Förster
Details
sci-biology:vcftools-0.1.14:20201021-131055.log (sci-biology:vcftools-0.1.14:20201021-131055.log,2.05 KB, text/plain)
2020-10-21 16:53 UTC, Toralf Förster
Details
temp.tbz2 (temp.tbz2,27.34 KB, application/x-bzip)
2020-10-21 16:53 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2020-10-21 16:53:10 UTC
 * ERROR: sci-biology/vcftools-0.1.14::gentoo failed (prepare phase):
 *   Failed Running autoconf !
 * 

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_desktop_gnome_systemd-libressl-20201010-201503

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-7.3.1
 [2] x86_64-pc-linux-gnu-10.2.0 *
clang version 11.0.0
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/11/bin
/usr/lib/llvm/11
11.0.0
Available Python interpreters, in order of preference:
  [1]   python3.7
  [2]   python3.9 (fallback)
  [3]   python3.8 (fallback)
  [4]   python2.7 (fallback)
Available Ruby profiles:
  [1]   ruby25 (with Rubygems)
  [2]   ruby26 (with Rubygems)
  [3]   ruby27 (with Rubygems) *
Available Rust versions:
  [1]   rust-bin-1.47.0 *
The following VMs are available for generation-2:
1)	IcedTea JDK 3.16.0 [icedtea-bin-8]
2)	JamVM JDK 2.0.0 [jamvm]
3)	OpenJDK 8.265_p01 [openjdk-8]
*)	AdoptOpenJDK 8.265_p01 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   icedtea-bin-8 
  [2]   jamvm 
  [3]   openjdk-8 
  [4]   openjdk-bin-8  system-vm

The Glorious Glasgow Haskell Compilation System, version 8.8.4

  timestamp(s) of HEAD at this tinderbox image:
/var/db/repos/gentoo	Wed Oct 21 01:05:25 PM UTC 2020
/var/db/repos/libressl	Sun Oct 18 04:35:14 PM UTC 2020

emerge -qpvO sci-biology/vcftools
[ebuild  N    ] sci-biology/vcftools-0.1.14  USE="-lapack"
Comment 1 Toralf Förster gentoo-dev 2020-10-21 16:53:12 UTC
Created attachment 667796 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2020-10-21 16:53:13 UTC
Created attachment 667799 [details]
autoconf.out
Comment 3 Toralf Förster gentoo-dev 2020-10-21 16:53:15 UTC
Created attachment 667802 [details]
emerge-history.txt
Comment 4 Toralf Förster gentoo-dev 2020-10-21 16:53:16 UTC
Created attachment 667805 [details]
environment
Comment 5 Toralf Förster gentoo-dev 2020-10-21 16:53:18 UTC
Created attachment 667808 [details]
etc.portage.tbz2
Comment 6 Toralf Förster gentoo-dev 2020-10-21 16:53:19 UTC
Created attachment 667811 [details]
sci-biology:vcftools-0.1.14:20201021-131055.log
Comment 7 Toralf Förster gentoo-dev 2020-10-21 16:53:20 UTC
Created attachment 667814 [details]
temp.tbz2
Comment 8 Lars Wendler (Polynomial-C) (RETIRED) gentoo-dev 2021-01-10 13:14:00 UTC
This has most likely been fixed by some changes in the final autoconf-2.70 release.