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Bug 734844 - dev-python/networkx-2.4-r1: fails TestConvertPandas.test_from_adjacency_named test on x86
Summary: dev-python/networkx-2.4-r1: fails TestConvertPandas.test_from_adjacency_named...
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Python Gentoo Team
URL: https://github.com/networkx/networkx/...
Whiteboard:
Keywords: TESTFAILURE
Depends on:
Blocks:
 
Reported: 2020-07-30 23:18 UTC by Sam James
Modified: 2020-07-30 23:20 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


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Description Sam James archtester gentoo-dev Security 2020-07-30 23:18:11 UTC
================================================================================== FAILURES ==================================================================================
________________________________________________________________ TestConvertPandas.test_from_adjacency_named _________________________________________________________________

self = <networkx.tests.test_convert_pandas.TestConvertPandas object at 0xeb3440ac>

    def test_from_adjacency_named(self):
        # example from issue #3105
        data = {"A": {"A": 0, "B": 0, "C": 0},
                "B": {"A": 1, "B": 0, "C": 0},
                "C": {"A": 0, "B": 1, "C": 0}}
        dftrue = pd.DataFrame(data)
        df = dftrue[["A", "C", "B"]]
        G = nx.from_pandas_adjacency(df, create_using=nx.DiGraph())
        df = nx.to_pandas_adjacency(G, dtype=int)
>       pd.testing.assert_frame_equal(df, dftrue)
E       AssertionError: Attributes of DataFrame.iloc[:, 0] (column name="A") are different
E
E       Attribute "dtype" are different
E       [left]:  int32
E       [right]: int64

networkx/tests/test_convert_pandas.py:173: AssertionError

----
Portage 2.3.103 (python 3.7.8-final-0, default/linux/x86/17.0, gcc-9.3.0, glibc-2.30-r8, 4.14.34-gentoo-infra38 i686)
=================================================================
System uname: Linux-4.14.34-gentoo-infra38-i686-Intel-R-_Xeon-R-_CPU_E5-2620_v4_@_2.10GHz-with-gentoo-2.6
KiB Mem:    16426740 total,   9740476 free
KiB Swap:    4194268 total,   4150236 free
Timestamp of repository gentoo: Thu, 30 Jul 2020 22:35:21 +0000
sh bash 5.0_p17
ld GNU ld (Gentoo 2.33.1 p2) 2.33.1
app-shells/bash:          5.0_p17::gentoo
dev-lang/perl:            5.30.3::gentoo
dev-lang/python:          2.7.18-r1::gentoo, 3.7.8-r2::gentoo, 3.8.4-r1::gentoo
dev-util/cmake:           3.16.5::gentoo
sys-apps/baselayout:      2.6-r1::gentoo
sys-apps/openrc:          0.42.1::gentoo
sys-apps/sandbox:         2.18::gentoo
sys-devel/autoconf:       2.13-r1::gentoo, 2.69-r4::gentoo
sys-devel/automake:       1.13.4-r2::gentoo, 1.16.1-r1::gentoo
sys-devel/binutils:       2.33.1-r1::gentoo
sys-devel/gcc:            9.3.0-r1::gentoo
sys-devel/gcc-config:     2.3::gentoo
sys-devel/libtool:        2.4.6-r6::gentoo
sys-devel/make:           4.2.1-r4::gentoo
sys-kernel/linux-headers: 5.4-r1::gentoo (virtual/os-headers)
sys-libs/glibc:           2.30-r8::gentoo
Repositories:

gentoo
    location: /bound/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    sync-rsync-verify-jobs: 1
    sync-rsync-verify-metamanifest: yes
    sync-rsync-extra-opts:
    sync-rsync-verify-max-age: 24

ACCEPT_KEYWORDS="x86"
ACCEPT_LICENSE="@FREE"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-O2 -march=i686 -pipe -fdiagnostics-show-option -frecord-gcc-switches"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /var/bind"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php7.4/ext-active/ /etc/php/cgi-php7.4/ext-active/ /etc/php/cli-php7.4/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -march=i686 -pipe"
DISTDIR="/bound/distfiles"
EMERGE_DEFAULT_OPTS="--complete-graph --with-bdeps=y --keep-going"
ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-O2 -march=i686 -pipe"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -march=i686 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="C.UTF8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu"
MAKEOPTS="-j9 -l9"
PKGDIR="/var/cache/binpkgs"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="acl berkdb bzip2 cli crypt dri fortran gdbm iconv ipv6 libtirpc ncurses nls nptl openmp pam pcre readline seccomp split-usr ssl tcpd threads unicode x86 xattr zlib" ABI_X86="32" ADA_TARGET="gnat_2018" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx avx2 f16c fma3 mmx mmxext pclmul popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="framebuffer" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-2 php7-3" POSTGRES_TARGETS="postgres10 postgres11" PYTHON_SINGLE_TARGET="python3_7" PYTHON_TARGETS="python2_7 python3_7" RUBY_TARGETS="ruby25" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Comment 1 Sam James archtester gentoo-dev Security 2020-07-30 23:18:54 UTC
Log is too large to upload but I'm not going to worry over it given the issue is reported upstream.