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Bug 732402 - sci-chemistry/gromacs fails to compile
Summary: sci-chemistry/gromacs fails to compile
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Alexey Shvetsov
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2020-07-13 06:59 UTC by Agostino Sarubbo
Modified: 2021-01-18 23:39 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log.bz2 (build.log.bz2,32.14 KB, application/x-bzip-compressed-tar)
2020-07-13 07:00 UTC, Agostino Sarubbo
Details
other.tar.bz2 (other.tar.bz2,9.46 KB, application/x-bzip-compressed-tar)
2020-07-13 07:00 UTC, Agostino Sarubbo
Details

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Description Agostino Sarubbo gentoo-dev 2020-07-13 06:59:58 UTC
https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/

Issue: sci-chemistry/gromacs fails to compile.
Discovered on: amd64  (internal ref: ci)
Comment 1 Agostino Sarubbo gentoo-dev 2020-07-13 07:00:06 UTC
Created attachment 649050 [details]
build.log.bz2

build log and emerge --info
Comment 2 Agostino Sarubbo gentoo-dev 2020-07-13 07:00:12 UTC
Created attachment 649052 [details]
other.tar.bz2

other logs
Comment 3 Agostino Sarubbo gentoo-dev 2020-11-11 11:38:03 UTC
@alexxy I cant still reproduce this
Comment 4 Alexey Shvetsov gentoo-dev 2020-11-11 20:34:23 UTC
Hi!

Cant or can?

Can you rerun it with versions in portage?
Comment 5 Agostino Sarubbo gentoo-dev 2020-11-12 07:30:41 UTC
(In reply to Alexey Shvetsov from comment #4)
> Hi!
> 
> Cant or can?
> 
> Can you rerun it with versions in portage?

SOrry, typo, I can reproduce
Comment 6 Agostino Sarubbo gentoo-dev 2021-01-18 15:38:13 UTC
Dear treecleaner@:

I'm still able to reproduce this issue right now.

Since it has not been fixed for a long time, I'd suggest to evaluate if it is the case to remove this package from the tree. Thanks
Comment 7 Pacho Ramos gentoo-dev 2021-01-18 20:44:54 UTC
Upstream is alive, it's widely used (also by me) and the error is related with something wrong in the docs installation in our side
Comment 8 Pacho Ramos gentoo-dev 2021-01-18 20:52:46 UTC
In my case it compiles ok... in your case you have:
[1/1] cd /var/tmp/portage/sci-chemistry/gromacs-2020.3/work/gromacs-2020.3_float/docs/manual && /usr/bin/cmake -E echo "Cannot build PDF manual, because a working form of ImageMagick convert is not available"
Cannot build PDF manual, because a working form of ImageMagick convert is not available

error


Maybe some USE flag is needed for imagemagick... I have these for mine:
[ebuild   R    ] media-gfx/imagemagick-7.0.10.46:0/7.0.10-37::gentoo  USE="X bzip2 cxx djvu heif jpeg lcms lzma openmp pango perl png postscript raw svg tiff truetype webp wmf xml zlib -corefonts -fftw -fontconfig -fpx -graphviz -hdri -jbig -jpeg2k -lqr -opencl -openexr -q32 -q8 -static-libs -test" 0 KiB
Comment 9 Christoph Junghans gentoo-dev 2021-01-18 22:26:07 UTC
It is because of bug #664236, gromacs converts images during the build for the pdf manual.
Comment 10 Pacho Ramos gentoo-dev 2021-01-18 22:44:19 UTC
But ebuild is already setting up a policy file to avoid that issue :/
Comment 11 Christoph Junghans gentoo-dev 2021-01-18 23:39:38 UTC
This is the test gromacs' cmake runs: https://gitlab.com/gromacs/gromacs/-/blob/master/cmake/gmxTestImageMagick.cmake#L56

Alternatively we could just use the pre-compiled pdf manual from the website.