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Bug 725858 - dev-libs/mongo-c-driver-1.13.0-r1: compile error, Sphinx API
Summary: dev-libs/mongo-c-driver-1.13.0-r1: compile error, Sphinx API
Status: UNCONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: AMD64 Linux
: Normal normal (vote)
Assignee: Ultrabug
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2020-05-28 10:14 UTC by Ullrich
Modified: 2020-06-09 15:17 UTC (History)
3 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (build.log,105.74 KB, text/x-log)
2020-05-29 12:28 UTC, Ullrich
Details

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Description Ullrich 2020-05-28 10:14:44 UTC
When re-installing dev-libs/mongo-c-driver with
$ emerge -1 dev-libs/mongo-c-driver

i get the following error:
/usr/lib/python3.7/importlib/__init__.py:127: RemovedInSphinx30Warning: sphinx.environment.NoUri is deprecated. Check CHANGES for Sphinx API modifications.
  return _bootstrap._gcd_import(name[level:], package, level)
/var/tmp/portage/dev-libs/mongo-c-driver-1.13.0-r1/work/mongo-c-driver-1.13.0/build/sphinx/mongoc_common.py:76: FutureWarning: 
   The iterable returned by Node.traverse()
   will become an iterator instead of a list in Docutils > 0.16.
  return matches[0]

Warning, treated as error:
the taglist extension is not safe for parallel reading
Not creating man page for api
Not creating man page for index
Not creating man page for lifecycle
Not creating man page for visual-studio-guide
ninja: build stopped: subcommand failed.


Reproducible: Always

Steps to Reproduce:
1. emerge -1 dev-libs/mongo-c-driver
2.
3.
Actual Results:  
 * ERROR: dev-libs/mongo-c-driver-1.13.0-r1::gentoo failed (compile phase):
 *   ninja -v -j5 -l0 failed

Expected Results:  
mongo-c-driver is re-installed

ullrich@localhost ~ $ emerge --info '=dev-libs/mongo-c-driver-1.13.0-r1::gentoo'
Portage 2.3.99 (python 3.7.7-final-0, default/linux/amd64/17.0/desktop/plasma, gcc-9.3.0, glibc-2.30-r8, 4.19.97-gentoo x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-4.19.97-gentoo-x86_64-Intel-R-_Core-TM-_i7-6600U_CPU_@_2.60GHz-with-gentoo-2.6
KiB Mem:    16283044 total,   6577444 free
KiB Swap:    8388604 total,   8388092 free
Timestamp of repository gentoo: Thu, 28 May 2020 00:45:01 +0000
sh bash 5.0_p17
ld GNU ld (Gentoo 2.33.1 p2) 2.33.1
app-shells/bash:          5.0_p17::gentoo
dev-java/java-config:     2.2.0-r4::gentoo
dev-lang/perl:            5.30.1::gentoo
dev-lang/python:          2.7.18::gentoo, 3.6.10-r2::gentoo, 3.7.7-r2::gentoo, 3.8.2-r2::gentoo
dev-util/cmake:           3.16.5::gentoo
dev-util/pkgconfig:       0.29.2::gentoo
sys-apps/baselayout:      2.6-r1::gentoo
sys-apps/openrc:          0.42.1::gentoo
sys-apps/sandbox:         2.13::gentoo
sys-devel/autoconf:       2.13-r1::gentoo, 2.69-r4::gentoo
sys-devel/automake:       1.13.4-r2::gentoo, 1.15.1-r2::gentoo, 1.16.1-r1::gentoo
sys-devel/binutils:       2.33.1-r1::gentoo
sys-devel/gcc:            9.2.0-r2::gentoo, 9.3.0::gentoo
sys-devel/gcc-config:     2.2.1::gentoo
sys-devel/libtool:        2.4.6-r6::gentoo
sys-devel/make:           4.2.1-r4::gentoo
sys-kernel/linux-headers: 5.4-r1::gentoo (virtual/os-headers)
sys-libs/glibc:           2.30-r8::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: webrsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    sync-webrsync-verify-signature: yes

ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="@FREE"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php7.2/ext-active/ /etc/php/apache2-php7.3/ext-active/ /etc/php/apache2-php7.4/ext-active/ /etc/php/cgi-php7.2/ext-active/ /etc/php/cgi-php7.3/ext-active/ /etc/php/cgi-php7.4/ext-active/ /etc/php/cli-php7.2/ext-active/ /etc/php/cli-php7.3/ext-active/ /etc/php/cli-php7.4/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-O2 -pipe"
DISTDIR="/usr/portage/distfiles"
ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="ftp://ftp.wh2.tu-dresden.de/pub/mirrors/gentoo http://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror/ ftp://ftp.halifax.rwth-aachen.de/gentoo/ ftp://ftp.uni-erlangen.de/pub/mirrors/gentoo rsync://ftp-stud.hs-esslingen.de/gentoo/"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j5"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="X a52 aac acl acpi activities alsa amd64 berkdb branding bzip2 cairo cdda cdr cli crypt cups dbus declarative dri dts dvd dvdr elogind emboss encode exif flac fortran gdbm gif gpm gtk iconv icu ipv6 jpeg kde kipi kwallet lcms ldap libnotify libtirpc mad mng mp3 mp4 mpeg multilib ncurses networkmanager nls nptl ogg opengl openmp pam pango pcre pdf phonon plasma png policykit ppds qml qt5 readline sdl seccomp semantic-desktop spell split-usr ssl startup-notification svg tcpd tiff truetype udev udisks unicode upower usb vorbis widgets wxwidgets x264 xattr xcb xml xv xvid zlib" ABI_X86="64" ADA_TARGET="gnat_2018" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx avx2 fma3 mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput" KERNEL="linux" L10N="en-GB en-US" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-2 php7-3" POSTGRES_TARGETS="postgres10 postgres11" PYTHON_SINGLE_TARGET="python3_7" PYTHON_TARGETS="python2_7 python3_7" RUBY_TARGETS="ruby24 ruby25" USERLAND="GNU" VIDEO_CARDS="intel i965" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

=================================================================
                        Package Settings
=================================================================

dev-libs/mongo-c-driver-1.13.0-r1::gentoo was built with the following:
USE="icu ssl -debug -examples -libressl -sasl -static-libs -test" ABI_X86="(64)"
FEATURES="sfperms binpkg-logs protect-owned news ebuild-locks binpkg-dostrip pid-sandbox strict parallel-fetch userfetch distlocks binpkg-docompress ipc-sandbox usersandbox multilib-strict unknown-features-warn xattr usersync assume-digests merge-sync config-protect-if-modified network-sandbox unmerge-logs sandbox preserve-libs unmerge-orphans userpriv fixlafiles"
Comment 1 Jonas Stein gentoo-dev 2020-05-28 16:05:34 UTC
Thank you for the report. We need to have all information at hand before ticket assignment. That is why I ask you to 
* attach the logs and 
as described on https://wiki.gentoo.org/wiki/Attach_the_logs_to_the_bug_ticket
Please reopen this ticket (Status:UNCONFIRMED) afterwards.
Comment 2 Tomáš Mózes 2020-05-28 17:31:42 UTC
Which version of sphinx do you please have installed?
Comment 3 Ullrich 2020-05-29 12:28:43 UTC
Created attachment 642492 [details]
build.log
Comment 4 Ullrich 2020-05-29 12:31:36 UTC
I assume this is the package:

localhost ~ # eix dev-python/sphinx
[I] dev-python/sphinx
     Available versions:  1.7.5-r2^t 2.0.1-r1^t 2.4.4^t ~3.0.3^t ~3.0.4^t {doc latex net test PYTHON_TARGETS="pypy3 python2_7 python3_6 python3_7 python3_8"}
     Installed versions:  2.4.4^t(09:50:09 AM 05/11/2020)(-doc -latex -test PYTHON_TARGETS="python3_7 -pypy3 -python3_6 -python3_8")
     Homepage:            https://www.sphinx-doc.org/ https://github.com/sphinx-doc/sphinx
     Description:         Python documentation generator
Comment 5 Michael O. Distler 2020-06-09 15:17:49 UTC
I have the same issue.

Since the error message points to a problem with parallel jobs, I got the package compiled and merged doing:

# emerge -1 dev-libs/mongo-c-driver # crash
#
# sed -i -e 's/\(sphinx-build\) -j [0-9]*/\1/p' /var/tmp/portage/dev-libs/mongo-c-driver-1.13.0-r1/work/mongo-c-driver-1.13.0_build/build.ninja
# ebuild /var/db/repos/gentoo/dev-libs/mongo-c-driver/mongo-c-driver-1.13.0-r1.ebuild merge
# ebuild /var/db/repos/gentoo/dev-libs/mongo-c-driver/mongo-c-driver-1.13.0-r1.ebuild clean

Another observation: 'build.ninja' uses the number of threads (=`nproc`) of my CPU independent of the setting in MAKEOPTS.