Bug 721196 – sci-libs/vtk-8.2.0 - cmake failed

• Status: RESOLVED DUPLICATE of bug 721412
• Product: Gentoo Linux

[Description alex.dorsch 2020-05-06 09:40:22 UTC]

ERROR: sci-libs/vtk-8.2.0::gentoo failed (configure phase):
 *   cmake failed

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# emerge --info =sci-libs/vtk-8.2.0::gentoo; by root
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# emerge --info =sci-libs/vtk-8.2.0::gentoo
Portage 2.3.99 (python 3.6.10-final-0, default/linux/amd64/17.1/desktop/plasma, gcc-9.3.0, glibc-2.31-r2, 4.19.97-gentoo-x86_64 x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-4.19.97-gentoo-x86_64-x86_64-Intel-R-_Core-TM-_i5-7300U_CPU_@_2.60GHz-with-gentoo-2.7
KiB Mem:     7906092 total,   1331528 free
KiB Swap:    2047996 total,   1702776 free
Timestamp of repository gentoo: Wed, 06 May 2020 09:00:01 +0000
Head commit of repository gentoo: a6dc45ebd9ec00d4f2d11d7e5f930a48e5e83f02
Timestamp of repository booboo: Wed, 06 May 2020 03:34:59 +0000
Head commit of repository booboo: a00ce9888ef40fad9fd9c97a206208ad2704239f

Timestamp of repository imaging: Tue, 05 May 2020 22:08:53 +0000
Head commit of repository imaging: 105a5ee6f54af23e25afe4f32e796e1f6f0cef0a

Head commit of repository science: ed47e6e4bb0282eb541890797441d142e16b7cc9

sh bash 5.0_p17
ld GNU ld (Gentoo 2.34 p1) 2.34.0
app-shells/bash:          5.0_p17::gentoo
dev-java/java-config:     2.2.0-r4::gentoo
dev-lang/perl:            5.30.2::gentoo
dev-lang/python:          2.7.18::gentoo, 3.6.10-r2::gentoo, 3.7.7-r2::gentoo, 3.8.2-r2::gentoo
dev-util/cmake:           3.17.2::gentoo
sys-apps/baselayout:      2.7::gentoo
sys-apps/openrc:          0.42.1::gentoo
sys-apps/sandbox:         2.18::gentoo
sys-devel/autoconf:       2.13-r1::gentoo, 2.69-r5::gentoo
sys-devel/automake:       1.13.4-r2::gentoo, 1.16.2::gentoo
sys-devel/binutils:       2.34::gentoo
sys-devel/gcc:            9.3.0::gentoo
sys-devel/gcc-config:     2.2.1::gentoo
sys-devel/libtool:        2.4.6-r6::gentoo
sys-devel/make:           4.3::gentoo
sys-kernel/linux-headers: 5.6::gentoo (virtual/os-headers)
sys-libs/glibc:           2.31-r2::gentoo
Repositories:

gentoo
    location: /var/db/repos/gentoo
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    sync-rsync-verify-max-age: 24
    sync-rsync-extra-opts: 
    sync-rsync-verify-jobs: 1
    sync-rsync-verify-metamanifest: yes

booboo
    location: /var/db/repos/booboo
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/booboo.git
    masters: gentoo

imaging
    location: /var/db/repos/imaging
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/imaging.git
    masters: gentoo

science
    location: /var/db/repos/science
    sync-type: git
    sync-uri: git://git.gentoo.org/proj/sci.git
    masters: gentoo

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* @FREE"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -pipe"
DISTDIR="/var/cache/distfiles"
ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j4"
PKGDIR="/var/cache/binpkgs"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="( ) X a52 aac acl acpi activities alsa amd64 bash-completion berkdb bluetooth branding bzip2 cairo cdda cdr cli crypt cups cxx? dbus declarative doc? dri dts dvd dvdr elogind emboss encode exif flac fortran gdbm gif gpm iconv icu ipv6 jpeg kde kipi kwallet latex lcms ldap libnotify libtirpc mad mng mp3 mp4 mpeg multilib ncurses nls nptl ogg opengl openmp openssl pam pango pcre pdf phonon plasma png policykit ppds pulseaudio qml qt4 qt5 readline sasl sdl seccomp semantic-desktop spell spice split-usr ssl startup-notification svg tcpd tiff truetype udev udisks unicode upower usb vorbis widgets wxwidgets x264 xattr xcb xcomposite xml xv xvid zlib" ABI_X86="64" ADA_TARGET="gnat_2018" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="efi-64" INPUT_DEVICES="synaptics libinput" KERNEL="linux" L10N="de-CH en-US" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-2" POSTGRES_TARGETS="postgres10 postgres11" PYTHON_SINGLE_TARGET="python3_6" PYTHON_TARGETS="python2_7 python3_6" QEMU_USER_TARGETS="x86_64" RUBY_TARGETS="ruby24 ruby25" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

[Comment 1 Francesco Turco 2020-05-06 09:56:00 UTC]

Please attach the full build log:
https://wiki.gentoo.org/wiki/Attach_the_logs_to_the_bug_ticket

[Comment 2 alex.dorsch 2020-05-06 20:57:16 UTC]

Created attachment 636574 [details]
log of emerge vtk

[Comment 3 Francesco Turco 2020-05-08 09:08:09 UTC]

Is sci-libs/proj installed on your system?

[Comment 4 Francesco Turco 2020-05-08 09:15:43 UTC]

Duplicate of bug #721412?

[Comment 5 Matthias Maier 2020-05-12 13:58:44 UTC]

*** This bug has been marked as a duplicate of bug 721412 ***