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Bug 720980 - dev-python/pandas-0.24.2: src_compile not parallel-safe
Summary: dev-python/pandas-0.24.2: src_compile not parallel-safe
Status: RESOLVED OBSOLETE
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks: parallel-make
  Show dependency tree
 
Reported: 2020-05-04 18:05 UTC by Patrick Lauer
Modified: 2021-02-24 20:20 UTC (History)
4 users (show)

See Also:
Package list:
Runtime testing required: ---


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Description Patrick Lauer gentoo-dev 2020-05-04 18:05:35 UTC
x86_64-pc-linux-gnu-gcc -shared -Wl,-O1 -Wl,--as-needed -O2 -pipe -ggdb -march=native /var/tmp/portage/dev-python/pandas-0.24.2/work/pandas-0.24.2-python3_6/temp.linux-x86_64-3.6/pandas/_lib
s/tslibs/conversion.o /var/tmp/portage/dev-python/pandas-0.24.2/work/pandas-0.24.2-python3_6/temp.linux-x86_64-3.6/pandas/_libs/tslibs/src/datetime/np_datetime.o /var/tmp/portage/dev-python/
pandas-0.24.2/work/pandas-0.24.2-python3_6/temp.linux-x86_64-3.6/pandas/_libs/tslibs/src/datetime/np_datetime_strings.o -L/usr/lib64 -lpython3.6m -o /var/tmp/portage/dev-python/pandas-0.24.2
/work/pandas-0.24.2-python3_6/lib/pandas/_libs/tslibs/conversion.cpython-36m-x86_64-linux-gnu.so
/usr/lib/gcc/x86_64-pc-linux-gnu/8.3.0/../../../../x86_64-pc-linux-gnu/bin/ld: /var/tmp/portage/dev-python/pandas-0.24.2/work/pandas-0.24.2-python3_6/temp.linux-x86_64-3.6/pandas/_libs/tslibs/src/datetime/np_datetime.o: file not recognized: file truncated
collect2: error: ld returned 1 exit status
x86_64-pc-linux-gnu-gcc -O2 -pipe -ggdb -march=native -fPIC -I./pandas/_libs/tslibs -Ipandas/_libs/tslibs -Ipandas/_libs/tslibs/src -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c pandas/_libs/tslibs/src/datetime/np_datetime_strings.c -o /var/tmp/portage/dev-python/pandas-0.24.2/work/pandas-0.24.2-python3_6/temp.linux-x86_64-3.6/pandas/_libs/tslibs/src/datetime/np_datetime_strings.o -Wno-unused-function
x86_64-pc-linux-gnu-gcc -shared -Wl,-O1 -Wl,--as-needed -O2 -pipe -ggdb -march=native /var/tmp/portage/dev-python/pandas-0.24.2/work/pandas-0.24.2-python3_6/temp.linux-x86_64-3.6/pandas/_libs/tslibs/timedeltas.o /var/tmp/portage/dev-python/pandas-0.24.2/work/pandas-0.24.2-python3_6/temp.linux-x86_64-3.6/pandas/_libs/tslibs/src/datetime/np_datetime.o /var/tmp/portage/dev-python/pandas-0.24.2/work/pandas-0.24.2-python3_6/temp.linux-x86_64-3.6/pandas/_libs/tslibs/src/datetime/np_datetime_strings.o -L/usr/lib64 -lpython3.6m -o /var/tmp/portage/dev-python/pandas-0.24.2/work/pandas-0.24.2-python3_6/lib/pandas/_libs/tslibs/timedeltas.cpython-36m-x86_64-linux-gnu.so
/usr/lib/gcc/x86_64-pc-linux-gnu/8.3.0/../../../../x86_64-pc-linux-gnu/bin/ld: /var/tmp/portage/dev-python/pandas-0.24.2/work/pandas-0.24.2-python3_6/temp.linux-x86_64-3.6/pandas/_libs/tslibs/src/datetime/np_datetime_strings.o: file not recognized: file truncated
collect2: error: ld returned 1 exit status

[...]

x86_64-pc-linux-gnu-gcc -shared -Wl,-O1 -Wl,--as-needed -O2 -pipe -ggdb -march=native /var/tmp/portage/dev-python/pandas-0.24.2/work/pandas-0.24.2-python3_6/temp.linux-x86_64-3.6/pandas/_libs/join.o -L/usr/lib64 -lpython3.6m -o /var/tmp/portage/dev-python/pandas-0.24.2/work/pandas-0.24.2-python3_6/lib/pandas/_libs/join.cpython-36m-x86_64-linux-gnu.so
error: command 'x86_64-pc-linux-gnu-gcc' failed with exit status 1
 * ERROR: dev-python/pandas-0.24.2::gentoo failed (compile phase):
 *   (no error message)
 *

Portage 2.3.89 (python 3.6.10-final-0, default/linux/amd64/17.0/no-multilib, gcc-8.3.0, glibc-2.29-r8, 4.19.72-gentoo x86_64)
=================================================================
System uname: Linux-4.19.72-gentoo-x86_64-AMD_EPYC_7401_24-Core_Processor-with-gentoo-2.6
KiB Mem:   528218428 total, 456216996 free
KiB Swap:    9764860 total,   9733372 free
Timestamp of repository gentoo: Mon, 04 May 2020 05:30:01 +0000
Head commit of repository gentoo: 45c05abcfa6c232ded71b067d86fb6804e7aee24
Head commit of repository adjust: 6ebdfe4672ab61fedabdca82491a772f151e6092

sh bash 5.0_p17
ld GNU ld (Gentoo 2.32 p2) 2.32.0
app-shells/bash:          5.0_p17::gentoo
dev-java/java-config:     2.2.0-r4::gentoo
dev-lang/perl:            5.30.1::gentoo
dev-lang/python:          2.7.18::gentoo, 3.6.10-r2::gentoo, 3.7.7-r2::gentoo, 3.8.2-r2::gentoo
dev-util/cmake:           3.16.5::gentoo
dev-util/pkgconfig:       0.29.2::gentoo
sys-apps/baselayout:      2.6-r1::gentoo
sys-apps/openrc:          0.42.1::gentoo
sys-apps/sandbox:         2.13::gentoo
sys-devel/autoconf:       2.69-r4::gentoo
sys-devel/automake:       1.16.1-r1::gentoo
sys-devel/binutils:       2.32-r1::gentoo, 2.33.1-r1::gentoo
sys-devel/gcc:            8.3.0-r1::gentoo, 9.3.0::gentoo
sys-devel/gcc-config:     2.2.1::gentoo
sys-devel/libtool:        2.4.6-r6::gentoo
sys-devel/make:           4.2.1-r4::gentoo
sys-kernel/linux-headers: 5.4::gentoo (virtual/os-headers)
sys-libs/glibc:           2.29-r8::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://esh-mon-1/gentoo-portage
    priority: -1000
    sync-rsync-verify-jobs: 1
    sync-rsync-verify-metamanifest: no
    sync-rsync-verify-max-age: 24
    sync-rsync-extra-opts:

adjust
    location: /var/lib/layman/adjust
    sync-type: git
    sync-uri: https://github.com/adjust/gentoo-overlay.git
    masters: gentoo
    priority: 50

ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe -ggdb -march=native"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-O2 -pipe -ggdb -march=native"
DISTDIR="/usr/portage/distfiles"
ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs compressdebug config-protect-if-modified distlocks ebuild-locks fixlafiles getbinpkg ipc-sandbox merge-sync multilib-strict network-sandbox parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms splitdebug strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://mirror.netcologne.de/gentoo/ ftp://ftp.wh2.tu-dresden.de/pub/mirrors/gentoo"
LANG="en_US.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j48"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="acl amd64 berkdb bzip2 cli crypt dri fortran gdbm git iconv iproute2 ipv6 libtirpc ncurses nls nptl openmp pam pcre perl python readline seccomp split-usr ssl tcpd unicode vim-syntax xattr zlib" ABI_X86="64" ADA_TARGET="gnat_2018" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx avx2 f16c fma3 mmx mmxext pclmul popcnt sha sse sse2 sse3 sse4_1 sse4_2 sse4a ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-2" POSTGRES_TARGETS="postgres10 postgres11" PYTHON_SINGLE_TARGET="python3_6" PYTHON_TARGETS="python2_7 python3_6" RUBY_TARGETS="ruby24 ruby25" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Comment 1 Pacho Ramos gentoo-dev 2020-06-07 10:42:07 UTC
can you retry with 1.0.4?
Comment 2 Michał Górny archtester Gentoo Infrastructure gentoo-dev Security 2021-02-24 20:20:41 UTC
Closing bugs reported for old versions, no longer in ::gentoo.  Please reopen if you can still reproduce.