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Bug 716300 - sci-biology/STAR-2.5.3a : SharedMemory.h: error: expected ) before key
Summary: sci-biology/STAR-2.5.3a : SharedMemory.h: error: expected ) before key
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo musl team
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2020-04-05 11:19 UTC by Toralf Förster
Modified: 2020-04-05 11:19 UTC (History)
3 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,16.69 KB, text/plain)
2020-04-05 11:19 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,335.62 KB, text/plain)
2020-04-05 11:19 UTC, Toralf Förster
Details
environment (environment,47.61 KB, text/plain)
2020-04-05 11:19 UTC, Toralf Förster
Details
etc.portage.tbz2 (etc.portage.tbz2,25.72 KB, application/x-bzip)
2020-04-05 11:19 UTC, Toralf Förster
Details
sci-biology:STAR-2.5.3a:20200405-103850.log (sci-biology:STAR-2.5.3a:20200405-103850.log,10.64 KB, text/plain)
2020-04-05 11:19 UTC, Toralf Förster
Details
temp.tbz2 (temp.tbz2,14.57 KB, application/x-bzip)
2020-04-05 11:19 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2020-04-05 11:19:26 UTC
x86_64-gentoo-linux-musl-g++ -c  -O2 -pipe -march=native -Wall -Wextra -pthread x86_64-gentoo-linux-musl-pkg-config --cflags htslib x86_64-gentoo-linux-musl-pkg-config --cflags zlib -std=c++11 -fopenmp -DCOMPILATION_TIME_PLACE=Sun Apr 5 12:38:59 CEST 2020 :/var/tmp/portage/sci-biology/STAR-2.5.3a/work/STAR-2.5.3a/source SharedMemory.cpp
In file included from SharedMemory.cpp:5:
SharedMemory.h:142:27: error: expected ) before key
  142 |         SharedMemory(key_t key, bool unloadLast);
      |                     ~     ^~~~
      |                           )

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.0_musl-20200328-141627

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-gentoo-linux-musl-9.3.0 *
clang version 10.0.0 
Target: x86_64-gentoo-linux-musl
Thread model: posix
InstalledDir: /usr/lib/llvm/10/bin
/usr/lib/llvm/10
10.0.0
Available Python interpreters, in order of preference:
  [1]   python3.8
  [2]   python3.7
  [3]   python3.6
  [4]   python2.7 (fallback)
Available Ruby profiles:
  [1]   ruby24 (with Rubygems)
  [2]   ruby25 (with Rubygems) *
Available Rust versions:
  [1]   rust-1.42.0 *
The following VMs are available for generation-2:
Available Java Virtual Machines:
  (none found)


timestamp of HEAD at this tinderbox image:
/var/db/repos/gentoo	Sun Apr  5 09:39:16 UTC 2020
/var/db/repos/musl	Sat Apr  4 03:02:24 UTC 2020

emerge -qpvO sci-biology/STAR
[ebuild  N    ] sci-biology/STAR-2.5.3a
Comment 1 Toralf Förster gentoo-dev 2020-04-05 11:19:29 UTC
Created attachment 630396 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2020-04-05 11:19:33 UTC
Created attachment 630398 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2020-04-05 11:19:36 UTC
Created attachment 630400 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2020-04-05 11:19:38 UTC
Created attachment 630402 [details]
etc.portage.tbz2
Comment 5 Toralf Förster gentoo-dev 2020-04-05 11:19:41 UTC
Created attachment 630404 [details]
sci-biology:STAR-2.5.3a:20200405-103850.log
Comment 6 Toralf Förster gentoo-dev 2020-04-05 11:19:44 UTC
Created attachment 630406 [details]
temp.tbz2