x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -fPIC -Imdtraj/rmsd/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c mdtraj/rmsd/src/center.c -o /var/tmp/portage/sci-chemistry/mdtraj-1.9.1/work/mdtraj-1.9.1-python3_6/build/temp.linux-x86_64-3.6/mdtraj/rmsd/src/center.o -fopenmp -msse2 -mssse3 -O3 -funroll-loops -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare mdtraj/rmsd/src/center.c: In function inplace_center_and_trace_atom_major: mdtraj/rmsd/src/center.c:22:13: error: n_frames not specified in enclosing parallel 22 | #pragma omp parallel for default(none) shared(coords, traces) \ | ^~~ mdtraj/rmsd/src/center.c:22:13: error: enclosing parallel ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.1-libressl-20200303-091600 ------------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-9.2.0 * clang: clang version 10.0.0 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/lib/llvm/10/bin llvm: 10.0.0 Available Python interpreters, in order of preference: [1] python3.8 [2] python3.7 [3] python3.6 [4] python2.7 (fallback) Available Ruby profiles: [1] ruby24 (with Rubygems) [2] ruby25 (with Rubygems) * Available Rust versions: [1] rust-1.41.1 * java-config: The following VMs are available for generation-2: *) AdoptOpenJDK 8.242_p08 [openjdk-bin-8] Available Java Virtual Machines: [1] openjdk-bin-8 system-vm ghc: The Glorious Glasgow Haskell Compilation System, version 8.0.2 repository: ==> /var/db/repos/gentoo/metadata/timestamp.chk <== Fri, 06 Mar 2020 11:37:33 +0000 emerge -qpvO sci-chemistry/mdtraj [ebuild N ] sci-chemistry/mdtraj-1.9.1 USE="-test" PYTHON_TARGETS="python3_6"
Created attachment 617326 [details] emerge-info.txt
Created attachment 617328 [details] emerge-history.txt
Created attachment 617330 [details] environment
Created attachment 617332 [details] etc.portage.tbz2
Created attachment 617334 [details] sci-chemistry:mdtraj-1.9.1:20200306-125455.log
Created attachment 617336 [details] temp.tbz2
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=4b72e59ed9b1fcdb1ab88ede59c9a863549c5295 commit 4b72e59ed9b1fcdb1ab88ede59c9a863549c5295 Author: Pacho Ramos <pacho@gentoo.org> AuthorDate: 2020-06-13 17:41:10 +0000 Commit: Pacho Ramos <pacho@gentoo.org> CommitDate: 2020-06-13 17:41:48 +0000 sci-chemistry/mdtraj: Bump to 1.9.4 Closes: https://bugs.gentoo.org/711696 Closes: https://bugs.gentoo.org/718478 Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: Pacho Ramos <pacho@gentoo.org> sci-chemistry/mdtraj/Manifest | 1 + sci-chemistry/mdtraj/mdtraj-1.9.4.ebuild | 43 ++++++++++++++++++++++++++++++++ 2 files changed, 44 insertions(+)