Gentoo Websites Logo
Go to: Gentoo Home Documentation Forums Lists Bugs Planet Store Wiki Get Gentoo!
Bug 707404 - sci-biology/lagan-2.0-r3 : fails to build with -fno-common or gcc-10
Summary: sci-biology/lagan-2.0-r3 : fails to build with -fno-common or gcc-10
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks: -fno-common
  Show dependency tree
 
Reported: 2020-01-30 19:05 UTC by Toralf Förster
Modified: 2020-01-30 19:05 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,16.48 KB, text/plain)
2020-01-30 19:05 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,251.75 KB, text/plain)
2020-01-30 19:05 UTC, Toralf Förster
Details
environment (environment,47.96 KB, text/plain)
2020-01-30 19:05 UTC, Toralf Förster
Details
etc.portage.tbz2 (etc.portage.tbz2,17.90 KB, application/x-bzip)
2020-01-30 19:05 UTC, Toralf Förster
Details
sci-biology:lagan-2.0-r3:20200130-000914.log (sci-biology:lagan-2.0-r3:20200130-000914.log,4.94 KB, text/plain)
2020-01-30 19:05 UTC, Toralf Förster
Details
temp.tbz2 (temp.tbz2,13.56 KB, application/x-bzip)
2020-01-30 19:05 UTC, Toralf Förster
Details

Note You need to log in before you can comment on or make changes to this bug.
Description Toralf Förster gentoo-dev 2020-01-30 19:05:14 UTC
      |                  ~^                 ~~~~~~~~~~~
      |                   |                    |
      |                   unsigned int         void *
      |                  %p
/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: /var/tmp/portage/sci-biology/lagan-2.0-r3/temp/ccaWaStg.o:(.bss+0x20): multiple definition of `indeces'; /var/tmp/portage/sci-biology/lagan-2.0-r3/temp/ccI50tNk.o:(.bss+0x40080): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: /var/tmp/portage/sci-biology/lagan-2.0-r3/temp/ccI50tNk.o: in function `connectToPrev':

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_no-multilib-20200124-204141

  -------------------------------------------------------------------

  Please see the tracker bug for details.

gcc-config -l:
 [1] x86_64-pc-linux-gnu-9.2.0 *

clang:
clang version 9.0.1 
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/9/bin
llvm:
9.0.1
Available Python interpreters, in order of preference:
  [1]   python3.8
  [2]   python3.7
  [3]   python3.6
  [4]   python2.7 (fallback)
Available Ruby profiles:
  [1]   ruby24 (with Rubygems)
  [2]   ruby25 (with Rubygems) *
Available Rust versions:
  [1]   rust-1.40.0 *
java-config:
The following VMs are available for generation-2:
*)	AdoptOpenJDK 8.242_p08 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-bin-8  system-vm
ghc:
The Glorious Glasgow Haskell Compilation System, version 8.0.2

repository:
==> /var/db/repos/gentoo/metadata/timestamp.chk <==
Wed, 29 Jan 2020 23:06:23 +0000

emerge -qpvO sci-biology/lagan
[ebuild  N    ] sci-biology/lagan-2.0-r3
Comment 1 Toralf Förster gentoo-dev 2020-01-30 19:05:17 UTC
Created attachment 608686 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2020-01-30 19:05:20 UTC
Created attachment 608688 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2020-01-30 19:05:23 UTC
Created attachment 608690 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2020-01-30 19:05:25 UTC
Created attachment 608692 [details]
etc.portage.tbz2
Comment 5 Toralf Förster gentoo-dev 2020-01-30 19:05:28 UTC
Created attachment 608694 [details]
sci-biology:lagan-2.0-r3:20200130-000914.log
Comment 6 Toralf Förster gentoo-dev 2020-01-30 19:05:31 UTC
Created attachment 608696 [details]
temp.tbz2