make -C webBlat make[1]: Entering directory '/var/tmp/portage/sci-biology/blat-34-r2/work/blatSrc/webBlat' x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -Wformat -Wimplicit -Wuninitialized -Wreturn-type -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o webBlat.o -c webBlat.c x86_64-pc-linux-gnu-gcc -o webBlat webBlat.o ../lib/amd64/jkOwnLib.a ../lib/amd64/jkweb.a -lm /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: ../lib/amd64/jkweb.a(htmshell.o):(.bss+0x20): multiple definition of `htmlRecover'; webBlat.o:(.bss+0x20): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: ../lib/amd64/jkweb.a(portimpl.o):(.bss+0x0): multiple definition of `htmlRecover'; webBlat.o:(.bss+0x20): first defined here ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.1_no-multilib-20200124-204141 ------------------------------------------------------------------- Please see the tracker bug for details. gcc-config -l: [1] x86_64-pc-linux-gnu-9.2.0 * llvm: 9.0.1 Available Python interpreters, in order of preference: [1] python3.7 [2] python3.6 [3] python2.7 (fallback) Available Ruby profiles: [1] ruby24 (with Rubygems) [2] ruby25 (with Rubygems) * Available Rust versions: [1] rust-1.40.0 * repository: ==> /var/db/repos/gentoo/metadata/timestamp.chk <== Sun, 26 Jan 2020 13:46:12 +0000 emerge -qpvO sci-biology/blat [ebuild N ] sci-biology/blat-34-r2
Created attachment 604660 [details] emerge-info.txt
Created attachment 604662 [details] emerge-history.txt
Created attachment 604664 [details] environment
Created attachment 604666 [details] etc.portage.tbz2
Created attachment 604668 [details] sci-biology:blat-34-r2:20200126-141522.log
Created attachment 604670 [details] temp.tbz2
Created attachment 604712 [details, diff] blat-34-gcc-10.patch
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=4550eaf9f23d3579acdf226618f3fb482e675956 commit 4550eaf9f23d3579acdf226618f3fb482e675956 Author: David Denoncin <ddenoncin@gmail.com> AuthorDate: 2020-07-04 14:26:35 +0000 Commit: Sergei Trofimovich <slyfox@gentoo.org> CommitDate: 2020-07-04 15:24:04 +0000 sci-biology/blat: -fno-common fix Closes: https://bugs.gentoo.org/706450 Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: David Denoncin <ddenoncin@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/16587 Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org> sci-biology/blat/blat-34-r2.ebuild | 7 +++++-- sci-biology/blat/files/blat-34-fno-common.patch | 11 +++++++++++ 2 files changed, 16 insertions(+), 2 deletions(-)