running: ipython notebook does not work on a current stable ( non keyworded ) installation. This seems to be due to version incompatibilities of ipykernel, tornado and or other packages. Unmasking the following set leaded to an installation that works: dev-python/jupyter_console ~amd64 dev-python/jupyter_core ~amd64 dev-python/jupyter_client ~amd64 dev-python/backcall ~amd64 dev-python/prompt_toolkit ~amd64 dev-python/ipyparallel ~amd64 dev-python/ipython ~amd64 dev-python/ipykernel ~amd64 I hence recommand either to stabelize or keyword packages in a way so that the different versions work together. Running an ipython notebook seems to work at first glance but one cannot connect to the kernel ( i.e. it fails running whatever python code in the notebook ) with the following error which seems to be tornado related: [I 14:39:06.006 NotebookApp] KernelRestarter: restarting kernel (4/5), new random ports Traceback (most recent call last): File "/usr/lib64/python3.6/runpy.py", line 193, in _run_module_as_main "__main__", mod_spec) File "/usr/lib64/python3.6/runpy.py", line 85, in _run_code exec(code, run_globals) File "/usr/lib64/python3.6/site-packages/ipykernel_launcher.py", line 16, in <module> app.launch_new_instance() File "/usr/lib64/python3.6/site-packages/traitlets/config/application.py", line 658, in launch_instance app.start() File "/usr/lib64/python3.6/site-packages/ipykernel/kernelapp.py", line 477, in start ioloop.IOLoop.instance().start() File "/usr/lib64/python3.6/site-packages/tornado/platform/asyncio.py", line 132, in start self.asyncio_loop.run_forever() File "/usr/lib64/python3.6/asyncio/base_events.py", line 425, in run_forever raise RuntimeError('This event loop is already running') RuntimeError: This event loop is already running [W 14:39:09.017 NotebookApp] KernelRestarter: restart failed however trying different (i.e. downgrading tornado to tornado 4 did not resolve the problem ) the problem was only resolved by unmasking the packages above. Reproducible: Always Steps to Reproduce: 1. install a current gentoo stable system. emerge dev-python/notebook 2. open a browser or an other ipython notebook client 3. try to run code in the client, which will utterly fail Actual Results: the ipython kernel can not be started from the jupyter client: [I 14:39:06.006 NotebookApp] KernelRestarter: restarting kernel (4/5), new random ports Traceback (most recent call last): File "/usr/lib64/python3.6/runpy.py", line 193, in _run_module_as_main "__main__", mod_spec) File "/usr/lib64/python3.6/runpy.py", line 85, in _run_code exec(code, run_globals) File "/usr/lib64/python3.6/site-packages/ipykernel_launcher.py", line 16, in <module> app.launch_new_instance() File "/usr/lib64/python3.6/site-packages/traitlets/config/application.py", line 658, in launch_instance app.start() File "/usr/lib64/python3.6/site-packages/ipykernel/kernelapp.py", line 477, in start ioloop.IOLoop.instance().start() File "/usr/lib64/python3.6/site-packages/tornado/platform/asyncio.py", line 132, in start self.asyncio_loop.run_forever() File "/usr/lib64/python3.6/asyncio/base_events.py", line 425, in run_forever raise RuntimeError('This event loop is already running') RuntimeError: This event loop is already running [W 14:39:09.017 NotebookApp] KernelRestarter: restart failed Expected Results: kernel starts and connects to the notebook Portage 2.3.79 (python 3.6.9-final-0, default/linux/amd64/17.0/no-multilib, gcc-9.2.0, glibc-2.29-r7, 4.19.82-gentoo x86_64) ================================================================= System uname: Linux-4.19.82-gentoo-x86_64-Intel-R-_Core-TM-_i7-8700_CPU_@_3.20GHz-with-gentoo-2.6 KiB Mem: 7940132 total, 5447844 free KiB Swap: 5092300 total, 5092300 free Timestamp of repository gentoo: Mon, 30 Dec 2019 10:00:01 +0000 Head commit of repository gentoo: 5de3a9337121c670602ba5c5e1e5c5aa37909e88 sh bash 4.4_p23-r1 ld GNU ld (Gentoo 2.32 p2) 2.32.0 app-shells/bash: 4.4_p23-r1::gentoo dev-lang/perl: 5.30.1::gentoo dev-lang/python: 2.7.17::gentoo, 3.6.9::gentoo dev-util/cmake: 3.14.6::gentoo sys-apps/baselayout: 2.6-r1::gentoo sys-apps/openrc: 0.41.2::gentoo sys-apps/sandbox: 2.13::gentoo sys-devel/autoconf: 2.13-r1::gentoo, 2.69-r4::gentoo sys-devel/automake: 1.16.1-r1::gentoo sys-devel/binutils: 2.32-r1::gentoo sys-devel/gcc: 9.2.0-r2::gentoo sys-devel/gcc-config: 2.1::gentoo sys-devel/libtool: 2.4.6-r3::gentoo sys-devel/make: 4.2.1-r4::gentoo sys-kernel/linux-headers: 4.19::gentoo (virtual/os-headers) sys-libs/glibc: 2.29-r7::gentoo Repositories: gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 sync-rsync-verify-metamanifest: yes sync-rsync-verify-max-age: 24 sync-rsync-extra-opts: sync-rsync-verify-jobs: 1 localebuilds location: /localebuilds masters: gentoo gnu-elpa location: /var/lib/layman/gnu-elpa masters: gentoo priority: 50 melpa location: /var/lib/layman/melpa masters: gnu-elpa gentoo priority: 50 melpa-stable location: /var/lib/layman/melpa-stable masters: gnu-elpa gentoo priority: 50 ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="@FREE swiss-prot freedist linux-firmware linux-fw-redistributable no-source-code STRIDE SURF vmd free-noncomm Intel-SDP" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -march=native -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O2 -march=native -pipe" DISTDIR="/usr/portage/distfiles" ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" FCFLAGS="-O2 -march=native -pipe" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict news parallel-fetch pid-sandbox preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -march=native -pipe" GENTOO_MIRRORS="http://distfiles.gentoo.org" LANG="en_US.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" LINGUAS="en de fr" MAKEOPTS="-j6" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" USE="X acl alsa amd64 berkdb bluetooth bzip2 cli crypt cxx dbus dri fontconfig fortran freetype gdbm gif iconv ipv6 jpeg lcms libtirpc mp3 ncurses nls nptl opengl openmp pam pcre pdf png readline seccomp split-usr ssl svg tcpd threads tiff truetype unicode vaapi vorbis vpx webp x264 x265 xattr xft zlib" ABI_X86="64" ADA_TARGET="gnat_2018" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx avx2 f16c fma3 mmx mmxext pclmul popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput keyboard mouse" KERNEL="linux" L10N="en de fr" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" NETBEANS_MODULES="apisupport cnd groovy gsf harness ide identity j2ee java mobility nb php profiler soa visualweb webcommon websvccommon xml" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-2" POSTGRES_TARGETS="postgres10 postgres11" PYTHON_SINGLE_TARGET="python3_6" PYTHON_TARGETS="python2_7 python3_6" RUBY_TARGETS="ruby24 ruby25" USERLAND="GNU" VIDEO_CARDS="intel i965" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
I am getting a similar error running portage 2.3.90: christophe@tanagra ~ $ sudo emerge -1Gav gnome-boxes --quiet * IMPORTANT: 1 news items need reading for repository 'gentoo'. * Use eselect news read to view new items. [binary N ] app-misc/scrub-2.6.1 [binary N ] sys-apps/dmidecode-3.2 USE="(-selinux)" [binary N ] dev-libs/yajl-2.1.0-r2 USE="-static-libs" ABI_X86="(64) -32 (-x32)" [binary N ] acct-group/qemu-0 [binary N ] acct-user/qemu-0 [binary N ] net-analyzer/openbsd-netcat-1.190 [binary N ] app-emulation/libvirt-6.0.0-r1 USE="caps dbus libvirtd macvtap nls policykit qemu udev vepa -apparmor -audit -dtrace -firewalld -fuse -glusterfs -iscsi -iscsi-direct -libssh -lvm -lxc -nfs -numa (-openvz) -parted -pcap -phyp -rbd -sasl (-selinux) -virt-network -virtualbox -wireshark-plugins -xen -zfs" [binary N ] net-misc/spice-gtk-0.37-r2 USE="gtk3 introspection policykit pulseaudio smartcard usbredir vala -libressl -lz4 -mjpeg -sasl -static-libs -webdav" [binary N ] app-cdr/cdrtools-3.02_alpha09-r2 USE="acl nls unicode -caps -filecaps (-selinux)" [binary N ] app-emulation/libvirt-glib-3.0.0 USE="introspection nls vala" [binary N ] virtual/cdrtools-0 [binary N ] gnome-extra/gnome-boxes-3.32.2 USE="-rdp" Would you like to merge these packages? [Yes/No] y >>> Running pre-merge checks for acct-group/qemu-0 >>> Running pre-merge checks for acct-user/qemu-0 >>> Running pre-merge checks for gnome-extra/gnome-boxes-3.32.2 * You need KVM support in your kernel to use GNOME Boxes local VM support! >>> Emerging binary (1 of 12) app-misc/scrub-2.6.1::gentoo >>> Jobs: 0 of 12 complete, 1 running Load avg: 1.28, 1.32, 1.35Exception in callback SequentialTaskQueue._task_exit(<_emerge.Binp...x7fe7038103a8>)(<Future finis...dy running',)>) handle: <Handle SequentialTaskQueue._task_exit(<_emerge.Binp...x7fe7038103a8>)(<Future finis...dy running',)>)> Traceback (most recent call last): File "/usr/lib64/python3.6/asyncio/events.py", line 145, in _run self._callback(*self._args) File "/usr/lib64/python3.6/site-packages/_emerge/SequentialTaskQueue.py", line 65, in _task_exit future.result() File "/usr/lib64/python3.6/site-packages/portage/util/futures/compat_coroutine.py", line 113, in _next future = self._generator.throw(previous.exception()) File "/usr/lib64/python3.6/site-packages/_emerge/SequentialTaskQueue.py", line 54, in _task_coroutine yield task.async_start() File "/usr/lib64/python3.6/site-packages/portage/util/futures/compat_coroutine.py", line 113, in _next future = self._generator.throw(previous.exception()) File "/usr/lib64/python3.6/site-packages/_emerge/AsynchronousTask.py", line 31, in async_start yield self._async_start() File "/usr/lib64/python3.6/site-packages/portage/util/futures/compat_coroutine.py", line 107, in _next future = next(self._generator) File "/usr/lib64/python3.6/site-packages/_emerge/AsynchronousTask.py", line 44, in _async_start self._start() File "/usr/lib64/python3.6/site-packages/_emerge/BinpkgFetcher.py", line 44, in _start AsyncTaskFuture(future=fetcher.async_lock()), File "/usr/lib64/python3.6/site-packages/_emerge/BinpkgFetcher.py", line 232, in async_lock self._lock_obj.start() File "/usr/lib64/python3.6/site-packages/_emerge/AsynchronousTask.py", line 52, in start self._start() File "/usr/lib64/python3.6/site-packages/_emerge/AsynchronousLock.py", line 47, in _start self.scheduler.run_until_complete(self._async_start()) File "/usr/lib64/python3.6/site-packages/portage/util/_eventloop/asyncio_event_loop.py", line 140, in _run_until_complete return self._loop.run_until_complete(future) File "/usr/lib64/python3.6/asyncio/base_events.py", line 475, in run_until_complete self.run_forever() File "/usr/lib64/python3.6/asyncio/base_events.py", line 429, in run_forever raise RuntimeError('This event loop is already running') RuntimeError: This event loop is already running --Return-- > /usr/lib64/python3.6/site-packages/portage/util/_eventloop/asyncio_event_loop.py(81)_internal_caller_exception_handler()->None -> pdb.set_trace() (Pdb)
I logged https://bugs.gentoo.org/711178 as an issue specifically with portage version 2.3.90 (not with 2.3.89)
*** This bug has been marked as a duplicate of bug 711178 ***
(In reply to Kobboi from comment #1) > AsyncTaskFuture(future=fetcher.async_lock()), > File "/usr/lib64/python3.6/site-packages/_emerge/BinpkgFetcher.py", line > 232, in async_lock > self._lock_obj.start() > File "/usr/lib64/python3.6/site-packages/_emerge/AsynchronousTask.py", > line 52, in start > self._start() > File "/usr/lib64/python3.6/site-packages/_emerge/AsynchronousLock.py", > line 47, in _start > self.scheduler.run_until_complete(self._async_start()) > File > "/usr/lib64/python3.6/site-packages/portage/util/_eventloop/ > asyncio_event_loop.py", line 140, in _run_until_complete > return self._loop.run_until_complete(future) > File "/usr/lib64/python3.6/asyncio/base_events.py", line 475, in > run_until_complete > self.run_forever() > File "/usr/lib64/python3.6/asyncio/base_events.py", line 429, in > run_forever > raise RuntimeError('This event loop is already running') > RuntimeError: This event loop is already running > --Return-- > > /usr/lib64/python3.6/site-packages/portage/util/_eventloop/asyncio_event_loop.py(81)_internal_caller_exception_handler()->None > -> pdb.set_trace() > (Pdb) That's bug 711178.
Hi I have no clue of what's going on here. Kobboi's comment seems to have no relation with Thomas Haschka's.
(In reply to Thomas Haschka from comment #0) > running: > ipython notebook > > does not work on a current stable ( non keyworded ) installation. > This seems to be due to version incompatibilities of ipykernel, tornado and > or > other packages. > > Unmasking the following set leaded to an installation that works: > dev-python/jupyter_console ~amd64 > dev-python/jupyter_core ~amd64 > dev-python/jupyter_client ~amd64 > dev-python/backcall ~amd64 > dev-python/prompt_toolkit ~amd64 > dev-python/ipyparallel ~amd64 > dev-python/ipython ~amd64 > dev-python/ipykernel ~amd64 > > I hence recommand either to stabelize or keyword packages in a way so that > the different versions work together. Please go ahead to file a stabilization request.
Old version removed. Please reopen if you can reproduce with current.
