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Bug 700198 - blas-reference, cblas-reference packages block lapack upgrades
Summary: blas-reference, cblas-reference packages block lapack upgrades
Status: RESOLVED WORKSFORME
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Related Packages
URL: https://wiki.gentoo.org/wiki/Blas-lap...
Whiteboard:
Keywords:
Depends on: 700196
Blocks:
  Show dependency tree
 
Reported: 2019-11-16 01:40 UTC by Harley Wiltzer
Modified: 2021-10-25 10:03 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
Output of emerge --info (emerge-info,6.20 KB, text/plain)
2019-11-16 01:40 UTC, Harley Wiltzer
Details

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Description Harley Wiltzer 2019-11-16 01:40:42 UTC
Created attachment 596306 [details]
Output of emerge --info

These are the packages that would be merged, in order:

Calculating dependencies... done!
[ebuild     U  ] sys-apps/kmod-26-r3::gentoo [26-r2::gentoo] USE="tools zlib -debug -doc -libressl -lzma -pkcs7% -python -static-libs (-ssl%*)" PYTHON_TARGETS="python2_7 python3_6 -python3_5 (-python3_7)" 0 KiB
[ebuild     U  ] sys-apps/acl-2.2.53::gentoo [2.2.52-r1::gentoo] USE="nls (split-usr) -static-libs" ABI_X86="(64) -32 (-x32)" 513 KiB
[ebuild     U  ] media-libs/flac-1.3.3::gentoo [1.3.2-r1::gentoo] USE="cxx ogg (-altivec) -debug -static-libs" ABI_X86="(64) -32 (-x32)" CPU_FLAGS_X86="-sse" 1,020 KiB
[ebuild     U  ] app-eselect/eselect-blas-0.2::gentoo [0.1::gentoo] 0 KiB
[ebuild     U  ] x11-libs/libnotify-0.7.8::gentoo [0.7.7-r1::gentoo] USE="introspection -test" ABI_X86="(64) -32 (-x32)" 106 KiB
[ebuild  N     ] sci-libs/lapack-3.8.0::gentoo  USE="-doc -eselect-ldso -lapacke" 7,253 KiB
[uninstall     ] sci-libs/lapack-reference-3.2.1-r4::gentoo  USE="-doc" 
[blocks b      ] sci-libs/lapack-reference ("sci-libs/lapack-reference" is blocking sci-libs/lapack-3.8.0)
[ebuild     U  ] virtual/blas-3.8::gentoo [3.7::gentoo] USE="-eselect-ldso%" 0 KiB
[ebuild     U  ] virtual/lapack-3.8::gentoo [3.1::gentoo] USE="-eselect-ldso%" 0 KiB
[blocks B      ] sci-libs/cblas-reference ("sci-libs/cblas-reference" is blocking sci-libs/lapack-3.8.0)
[blocks B      ] app-eselect/eselect-cblas ("app-eselect/eselect-cblas" is blocking sci-libs/lapack-3.8.0)
[blocks B      ] sci-libs/blas-reference ("sci-libs/blas-reference" is blocking sci-libs/lapack-3.8.0)

Total: 8 packages (7 upgrades, 1 new, 1 uninstall), Size of downloads: 8,890 KiB
Conflict: 4 blocks (3 unsatisfied)

 * Error: The above package list contains packages which cannot be
 * installed at the same time on the same system.

  (sci-libs/cblas-reference-20030223-r6:0/0::gentoo, installed) pulled in by
    sci-libs/cblas-reference required by @selected
    sci-libs/cblas-reference required by (virtual/cblas-1.0:0/0::gentoo, installed)

  (sci-libs/lapack-3.8.0:0/0::gentoo, ebuild scheduled for merge) pulled in by
    >=sci-libs/lapack-3.8[eselect-ldso?] (>=sci-libs/lapack-3.8) required by (virtual/blas-3.8:0/0::gentoo, ebuild scheduled for merge)
    >=sci-libs/lapack-3.8.0[eselect-ldso?] (>=sci-libs/lapack-3.8.0) required by (virtual/lapack-3.8:0/0::gentoo, ebuild scheduled for merge)

  (app-eselect/eselect-cblas-0.1:0/0::gentoo, installed) pulled in by
    app-eselect/eselect-cblas required by @selected
    app-eselect/eselect-cblas required by (sci-libs/cblas-reference-20030223-r6:0/0::gentoo, installed)

  (sci-libs/blas-reference-20161223:0/0::gentoo, installed) pulled in by
    sci-libs/blas-reference required by @selected
Comment 1 Gleb 2019-11-16 05:42:57 UTC
Should be resolved after https://bugs.gentoo.org/700196
Comment 2 Harley Wiltzer 2019-11-17 15:10:37 UTC
The stabilization of virtual/cblas-3.8 causes more blocks:

These are the packages that would be merged, in order:

Calculating dependencies... done!
[ebuild  N    #] sci-libs/lapack-3.8.0::gentoo  USE="-doc -eselect-ldso -lapacke" 7,253 KiB
[ebuild     U  ] virtual/cblas-3.8::gentoo [1.0::gentoo] USE="-eselect-ldso%" 0 KiB
[blocks B      ] app-eselect/eselect-cblas ("app-eselect/eselect-cblas" is blocking sci-libs/lapack-3.8.0)
[blocks B      ] sci-libs/lapack-reference ("sci-libs/lapack-reference" is blocking sci-libs/lapack-3.8.0)
[blocks B      ] sci-libs/blas-reference ("sci-libs/blas-reference" is blocking sci-libs/lapack-3.8.0)
[blocks B      ] sci-libs/cblas-reference ("sci-libs/cblas-reference" is blocking sci-libs/lapack-3.8.0)

Total: 2 packages (1 upgrade, 1 new), Size of downloads: 7,253 KiB
Conflict: 4 blocks (4 unsatisfied)

 * Error: The above package list contains packages which cannot be
 * installed at the same time on the same system.

  (app-eselect/eselect-cblas-0.1:0/0::gentoo, installed) pulled in by
    app-eselect/eselect-cblas required by @selected
    app-eselect/eselect-cblas required by (sci-libs/cblas-reference-20030223-r6:0/0::gentoo, installed)

  (sci-libs/lapack-3.8.0:0/0::gentoo, ebuild scheduled for merge) pulled in by
    >=sci-libs/lapack-3.8.0[eselect-ldso?] (>=sci-libs/lapack-3.8.0) required by (virtual/cblas-3.8:0/0::gentoo, ebuild scheduled for merge)

  (sci-libs/lapack-reference-3.2.1-r4:0/0::gentoo, installed) pulled in by
    >=sci-libs/lapack-reference-3.1 required by (virtual/lapack-3.1:0/0::gentoo, installed)

  (sci-libs/blas-reference-20161223:0/0::gentoo, installed) pulled in by
    >=sci-libs/blas-reference-20161223 required by (virtual/blas-3.7:0/0::gentoo, installed)
    sci-libs/blas-reference required by @selected

  (sci-libs/cblas-reference-20030223-r6:0/0::gentoo, installed) pulled in by
    sci-libs/cblas-reference required by @selected
Comment 3 Benda Xu gentoo-dev 2019-11-18 00:39:05 UTC
(In reply to Harley Wiltzer from comment #2)
> 
> Total: 2 packages (1 upgrade, 1 new), Size of downloads: 7,253 KiB
> Conflict: 4 blocks (4 unsatisfied)
> 
>  * Error: The above package list contains packages which cannot be
>  * installed at the same time on the same system.
> 
>   (app-eselect/eselect-cblas-0.1:0/0::gentoo, installed) pulled in by
>     app-eselect/eselect-cblas required by @selected
>     app-eselect/eselect-cblas required by
> (sci-libs/cblas-reference-20030223-r6:0/0::gentoo, installed)
> 
>   (sci-libs/blas-reference-20161223:0/0::gentoo, installed) pulled in by
>     >=sci-libs/blas-reference-20161223 required by
> (virtual/blas-3.7:0/0::gentoo, installed)
>     sci-libs/blas-reference required by @selected
> 
>   (sci-libs/cblas-reference-20030223-r6:0/0::gentoo, installed) pulled in by
>     sci-libs/cblas-reference required by @selected

You have selected eselect-cblas, etc.  Portage cannot automatically resolve it.  The only way is to manually remove these 3 packages.
Comment 4 Harley Wiltzer 2019-11-18 02:48:24 UTC
(In reply to Benda Xu from comment #3)
> You have selected eselect-cblas, etc.  Portage cannot automatically resolve
> it.  The only way is to manually remove these 3 packages.

Well for the time being I masked >=cblas-3.8, etc, with the idea that once this bug is resolved I can simply unmask them.
Comment 5 Benda Xu gentoo-dev 2019-11-18 04:02:54 UTC
(In reply to Harley Wiltzer from comment #4)
> (In reply to Benda Xu from comment #3)
> > You have selected eselect-cblas, etc.  Portage cannot automatically resolve
> > it.  The only way is to manually remove these 3 packages.
> 
> Well for the time being I masked >=cblas-3.8, etc, with the idea that once
> this bug is resolved I can simply unmask them.

The migration requires manual intervention in your case.  You can postpond it to the future but that cannot be circumvented as far as I can see.