sci-visualization/gnuplot-5.2.6 fails to build when USE="doc" due to sandbox violations in /usr/share/texmf-dist/fonts/ directories. Reproducible: Always Steps to Reproduce: emerge -v1 =sci-visualization/gnuplot-5.2.6
emerge --info =sci-visualization/gnuplot-5.2.6 Portage 2.3.66 (python 3.6.5-final-0, default/linux/amd64/17.0, gcc-8.3.0, glibc-2.29-r2, 4.19.52-gentoo-bala-005 x86_64) ================================================================= System Settings ================================================================= System uname: Linux-4.19.52-gentoo-bala-005-x86_64-Intel-R-_Core-TM-_i7-7600U_CPU_@_2.80GHz-with-gentoo-2.6 KiB Mem: 20302152 total, 12257236 free KiB Swap: 66846716 total, 66846716 free Timestamp of repository gentoo: Fri, 12 Jul 2019 21:45:01 +0000 Head commit of repository gentoo: 3996629cd3e9f71bf44f03e8a59529d7e740f1a7 sh bash 4.4_p23-r1 ld GNU ld (Gentoo 2.32 p2) 2.32.0 app-shells/bash: 4.4_p23-r1::gentoo dev-java/java-config: 2.2.0-r4::gentoo dev-lang/perl: 5.28.2-r1::gentoo dev-lang/python: 2.7.15::gentoo, 3.6.5::gentoo dev-util/cmake: 3.14.3::gentoo sys-apps/baselayout: 2.6-r1::gentoo sys-apps/openrc: 0.41.2::gentoo sys-apps/sandbox: 2.13::gentoo sys-devel/autoconf: 2.13-r1::gentoo, 2.69-r4::gentoo sys-devel/automake: 1.16.1-r1::gentoo sys-devel/binutils: 2.32-r1::gentoo sys-devel/gcc: 8.3.0-r1::gentoo sys-devel/gcc-config: 2.0::gentoo sys-devel/libtool: 2.4.6-r3::gentoo sys-devel/make: 4.2.1-r4::gentoo sys-kernel/linux-headers: 4.14-r1::gentoo (virtual/os-headers) sys-libs/glibc: 2.29-r2::gentoo Repositories: gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://baobab.home-net/gentoo-portage priority: -1000 sync-rsync-verify-max-age: 24 sync-rsync-extra-opts: sync-rsync-verify-metamanifest: yes sync-rsync-verify-jobs: 1 torbrowser location: /var/lib/layman/torbrowser sync-type: laymansync sync-uri: https://github.com/MeisterP/torbrowser-overlay.git masters: gentoo priority: 50 Installed sets: @kernels ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=native -O2 -pipe" DISTDIR="/usr/portage/distfiles" EMERGE_DEFAULT_OPTS=" --autounmask=y" ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" FCFLAGS="-march=native -O2 -pipe" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs compress-build-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned sandbox sfperms split-log strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-march=native -O2 -pipe" GENTOO_MIRRORS="ftp::baobab.home-net http://distfiles.gentoo.org" LANG="en_GB.UTF-8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j3" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" USE="X Xaw3d acl alsa amd64 bash-completion berkdb bzip2 cairo cddb cli crypt cups curl cxx dbus dga dri dts dvb dvd emacs fbcon ffpeg flac fontconfig fortran gdbm gif gnutls gstreamer gtk iconv icu id3tag jack jpeg jpeg2k kpathsea ladspa lash latex lcms libass libsamplerate libtirpc mad matroska mikmod mmx mng modplug motif mp3 mpeg mtp multilib musepack nas ncurses nls nptl nsplugins ogg openal opengl openmp opus oss pam pcre png qt5 readline sdl seccomp sndfile spell ssl startup-notification svg taglib tcl tcpd theora tiff timidity tk truetype udev unicode vaapi vdpau vorbis xattr xemacs xml xv zlib" ABI_X86="64" ALSA_CARDS="hda-intel" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="emu efi-32 efi-64 pc" INPUT_DEVICES="evdev libinput keyboard mouse synaptics" KERNEL="linux" L10N="en-GB en-US" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" NETBEANS_MODULES="apisupport cnd groovy gsf harness ide identity j2ee java mobility nb php profiler soa visualweb webcommon websvccommon xml" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-2" POSTGRES_TARGETS="postgres10 postgres11" PYTHON_SINGLE_TARGET="python3_6" PYTHON_TARGETS="python2_7 python3_6" QEMU_SOFTMMU_TARGETS="i386" QEMU_USER_TARGETS="i386" RUBY_TARGETS="ruby24" USERLAND="GNU" VIDEO_CARDS="fbdev intel i915 i965 vesa" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS ================================================================= Package Settings ================================================================= sci-visualization/gnuplot-5.2.6::gentoo was built with the following: USE="X cairo compat examples gd latex qt5 readline (-aqua) -bitmap -doc -ggi -libcaca -libcerf -lua -regis (-svga) -wxwidgets" ABI_X86="(64)" CXXFLAGS="-march=native -O2 -pipe -std=c++11"
Created attachment 582694 [details] emerge log file
Related to 679858 ?
I cannot reproduce this, neither with texlive-2017 nor with -2019. Could you try if the recipe from bug 675490 comment #3 solves it? > Try running "fc-cache -r" as root, then see if the gromacs emerge succeeds.
(In reply to Ulrich Müller from comment #4) > I cannot reproduce this, neither with texlive-2017 nor with -2019. > > Could you try if the recipe from bug 675490 comment #3 solves it? > > Try running "fc-cache -r" as root, then see if the gromacs emerge succeeds. Yes, both gromacs-2019.2 and gnuplot-5.2.6 now build with USE-"doc" set, after I ran "fc-cache -r" as root, but not before. Thanks!
(In reply to Ted Marston from comment #5) > Yes, both gromacs-2019.2 and gnuplot-5.2.6 now build with USE-"doc" set, > after I ran "fc-cache -r" as root, but not before. Thanks! Closing this bug for now. In any case, thank you for reporting.
