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Bug 645666 - sci-visualization/kst-2.0.8 - In file included from .../work/Kst-2.0.8/src/plugins/fits/exponential_unweighted/fitexponential_unweighted.cpp:24:0: .../Kst-2.0.8/src/plugins/fits/exponential_unweighted/../non_linear.h: error: ‘struct gsl_multifit_fdfsolver
Summary: sci-visualization/kst-2.0.8 - In file included from .../work/Kst-2.0.8/src/pl...
Status: RESOLVED DUPLICATE of bug 574746
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Qt Bug Alias
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2018-01-25 09:30 UTC by urcindalo
Modified: 2018-02-10 11:52 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log.gz (build.log.gz,38.66 KB, application/gzip)
2018-01-25 09:30 UTC, urcindalo
Details

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Description urcindalo 2018-01-25 09:30:54 UTC
Created attachment 516522 [details]
build.log.gz

I run a mostly stable amd64 box (apart from some scientific packages). When I'm trying to emerge kst-2.0.8, it fails at 94% when linking CXX static library libkst2app.a (build.log attached).

=====
# emerge --info '=sci-visualization/kst-2.0.8::gentoo'
Portage 2.3.19 (python 2.7.14-final-0, default/linux/amd64/17.0/desktop/plasma/systemd, gcc-6.4.0, glibc-2.25-r9, 4.9.76-gentoo-r1 x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-4.9.76-gentoo-r1-x86_64-Intel-R-_Core-TM-2_Quad_CPU_Q8300_@_2.50GHz-with-gentoo-2.4.1
KiB Mem:     4042816 total,    330924 free
KiB Swap:    6291452 total,   6275288 free
Timestamp of repository gentoo: Thu, 25 Jan 2018 08:00:01 +0000
Head commit of repository gentoo: ea071dad9041aca4b612a46873155ff18cfefe81
sh bash 4.4_p12
ld GNU ld (Gentoo 2.29.1 p3) 2.29.1
app-shells/bash:          4.4_p12::gentoo
dev-java/java-config:     2.2.0-r3::gentoo
dev-lang/perl:            5.24.3::gentoo
dev-lang/python:          2.7.14-r1::gentoo, 3.5.4-r1::gentoo
dev-util/cmake:           3.9.6::gentoo
dev-util/pkgconfig:       0.29.2::gentoo
sys-apps/baselayout:      2.4.1-r2::gentoo
sys-apps/sandbox:         2.12::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69-r4::gentoo
sys-devel/automake:       1.11.6-r2::gentoo, 1.15.1-r1::gentoo
sys-devel/binutils:       2.29.1-r1::gentoo
sys-devel/gcc:            6.4.0-r1::gentoo
sys-devel/gcc-config:     1.8-r1::gentoo
sys-devel/libtool:        2.4.6-r3::gentoo
sys-devel/make:           4.2.1::gentoo
sys-kernel/linux-headers: 4.13::gentoo (virtual/os-headers)
sys-libs/glibc:           2.25-r9::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    sync-rsync-extra-opts: 

local
    location: /usr/portage/local
    masters: gentoo
    priority: 0

vmware
    location: /var/lib/layman/vmware
    sync-type: laymansync
    sync-uri: git://anongit.gentoo.org/proj/vmware.git
    masters: gentoo
    priority: 50

ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/themes/oxygen-gtk/gtk-2.0"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/usr/portage/distfiles"
EMERGE_DEFAULT_OPTS="--with-bdeps y"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync multilib-strict news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="es_ES.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="es_ES es en_US en"
MAKEOPTS="-j5"
PKGDIR="/home/ramiro/usr/local/portage/pkgdir-backup/"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="X a52 aac aalib accessibility acl acpi activities additions adns ads alsa amd64 apbs apm apng archive arpack attica audiofile auth authfile autoipd autoreplace autotrace bash-completion bcmath bdf berkdb binary-drivers blas branding bzip2 cairo caps cdda cddb cdparanoia cdr cdrom cg chm chroot clamav cli compat contactnotes context crypt css ctype cups curl curlwrappers custom-optimization cxx dbus declarative designer-plugin desktopglobe detex dga dia directfb djvu dri dts dvd dvdr dvi dvipdfm emboss emf emovix enca encode exif expoblending extensions extra fam fastcgi fat fbcon ffmpeg fftw firefox flac flatfile flickr fltk fontconfig foomaticdb fortran fpx ftp fuse gallium gd gdbm geoip geolocation gif gimp git glamor glew gmp gphoto2 gpm gps gpssync grammar graphics graphviz grub gsl gstreamer gtk gzip hddtemp hdri hfs history hpcups hpijs humanities icedtea7 iconv icu id3tag idn ieee1394 imagemagick imap imlib inifile inkjar ipv6 jack jadetex java java6 javafx javascript jbig jce jfs jpeg jpeg2k json justify kde kipi kwallet ladspa lame lapack latex lcms ldap lensfun libcaca libnotify libsecret libssh2 libwww live llvm llvm-shared-libs lm_sensors logrotate lqr lua lzo m17n-lib mad maildir math matroska mbox md5sum mdb mediawiki memlimit metis milter mime mjpeg mmap mmxext mng mobi modplug modules mono motif mozilla mp3 mp4 mpeg mplayer msms msn mtp multilib multiuser musepack music musicbrainz nas ncurses neXt net netboot network network-cron networking networkmanager new-login nis nls npp nptl nsplugin ntfs ntfsprogs numpy ofx ogg omega openal openbabel opencl openexr opengl openmax openmp opensslcrypt openvg osc ots pam pango panorama parse-clocks pcntl pcre pdf phonon plasma plotutils plugins png policykit portaudio posix postproc postscript povray ppds profile pstricks publishers qalculate qml qt3support qt5 quicktime qwt rar raw rdesktop readline redeyes reiserfs resolvconf rss rtc rtf rtsp ruby samba sasl scanner science sdk sdl sdl-image seccomp semantic-desktop sensord shout simplexml skey skins slang slp smp snmp soap sockets socks5 solver source sox speex spell sse3 sse4 sse41 sse4_1 ssl ssse3 startup-notification subtitles subversion svg swat sync-plugin-portage syslog systemd sysvipc szip t1lib taglib tbb tcl tcpd tex4ht tga theora thesaurus threads thumbnail thunderbird tidy tiff tk truetype twolame udev udisks unicode upower usb userlocales v4l vaapi vcd vcdx vdpau vlm vmd vnc vorbis wavpack wayland wayland-compositor wddx webdav webstart widgets winbind winpopup wmf wxwidgets x264 xa xanim xattr xcb xcomposite xetex xface xforms xfs xft xindy xine xls xml xmlreader xmlrpc xmlwriter xmp xorgmodule xplanet xpm xsl xv xvid xvmc zip zlib zoran" ABI_X86="64 32" ALSA_CARDS="hda-intel" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2 sse3 sse4_1 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="evdev" KERNEL="linux" L10N="es-ES es en-US en" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6 php7-0" POSTGRES_TARGETS="postgres9_5" PYTHON_SINGLE_TARGET="python3_5" PYTHON_TARGETS="python2_7 python3_5" RUBY_TARGETS="ruby22 ruby23" SANE_BACKENDS="epson2 hp samsung" USERLAND="GNU" VIDEO_CARDS="nouveau" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
=====

=====
# emerge -pqv '=sci-visualization/kst-2.0.8::gentoo'
[ebuild  N    ] sci-visualization/kst-2.0.8  USE="-debug {-test}" 
lab /home/ramiro # emerge -pqv '=sci-visualization/kst-2.0.8::gentoo'
[ebuild  N    ] sci-libs/netcdf-4.3.2-r1  USE="dap hdf5 szip -examples -hdf -mpi -static-libs {-test} -tools" 
[ebuild  N    ] sci-libs/netcdf-cxx-4.2-r300  USE="-examples -static-libs" 
[ebuild  N    ] sci-libs/getdata-0.9.0-r1  USE="bzip2 cxx flac fortran -debug -lzma -perl -python -static-libs" PYTHON_TARGETS="python2_7" 
[ebuild  N    ] sci-visualization/kst-2.0.8  USE="-debug {-test}" 

The following keyword changes are necessary to proceed:
 (see "package.accept_keywords" in the portage(5) man page for more details)
# required by sci-visualization/kst-2.0.8::gentoo
# required by =sci-visualization/kst-2.0.8::gentoo (argument)
=sci-libs/getdata-0.9.0-r1 ~amd64
=====
Comment 1 Michael Palimaka (kensington) gentoo-dev 2018-02-10 11:52:43 UTC

*** This bug has been marked as a duplicate of bug 574746 ***