616962 – sci-chemistry/avogadro2-0.9.0 : CMake Error at /.../AvogadroLibsTargets.cmake:205 (message):

Bug 616962 - sci-chemistry/avogadro2-0.9.0 : CMake Error at /.../AvogadroLibsTargets.cmake:205 (message):

Summary: sci-chemistry/avogadro2-0.9.0 : CMake Error at /.../AvogadroLibsTargets.cmake...

Status:	RESOLVED DUPLICATE of bug 624242

Alias:	None

Product:	Gentoo Linux
Classification:	Unclassified
Component:	Current packages (show other bugs)
Hardware:	All Linux

Importance:	Normal normal (vote)
Assignee:	Gentoo Chemistry-Related Packages

URL:
Whiteboard:
Keywords:	PATCH

Depends on:
Blocks:

Reported:	2017-04-29 09:35 UTC by Toralf Förster
Modified:	2018-03-04 12:33 UTC (History)
CC List:	2 users (show)

See Also:
Package list:
Runtime testing required:	---

Attachments
emerge-info.txt (emerge-info.txt,5.75 KB, text/plain) 2017-04-29 09:35 UTC, Toralf Förster	Details
CMakeOutput.log (CMakeOutput.log,50.64 KB, text/plain) 2017-04-29 09:35 UTC, Toralf Förster	Details
emerge-history.txt (emerge-history.txt,368.10 KB, text/plain) 2017-04-29 09:35 UTC, Toralf Förster	Details
environment (environment,119.14 KB, text/plain) 2017-04-29 09:35 UTC, Toralf Förster	Details
etc.portage.tbz2 (etc.portage.tbz2,25.83 KB, application/x-bzip) 2017-04-29 09:35 UTC, Toralf Förster	Details
sci-chemistry:avogadro2-0.9.0:20170429-092113.log (sci-chemistry:avogadro2-0.9.0:20170429-092113.log,4.44 KB, text/plain) 2017-04-29 09:35 UTC, Toralf Förster	Details
temp.tbz2 (temp.tbz2,29.04 KB, application/x-bzip) 2017-04-29 09:36 UTC, Toralf Förster	Details
fixes a cmake file to compile with gcc-6 and gcc-7 (avogadrolibs-gcc6.patch,625 bytes, patch) 2017-05-26 12:30 UTC, milan hodoscek	Details \| Diff
Show Obsolete (1) View All Add an attachment (proposed patch, testcase, etc.)

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Description Toralf Förster gentoo-dev

2017-04-29 09:35:39 UTC

-- Found Git: /usr/bin/git (found version "2.12.2") 
-- Could not use git to determine source version, using version 0.9.0
CMake Error at /usr/lib64/cmake/avogadrolibs/AvogadroLibsTargets.cmake:205 (message):
  The imported target "jsoncpp" references the file

     "/usr/lib64/libjsoncpp.a"

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: plasma-systemd_20170420-191853

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-5.4.0 *

Available Python interpreters, in order of preference:
  [1]   python3.4
  [2]   python2.7 (fallback)
  [3]   jython2.7 (fallback)
Available Ruby profiles:
  [1]   ruby21 (with Rubygems)
  [2]   ruby22 (with Rubygems) *
java-config:
The following VMs are available for generation-2:
1)	IcedTea JDK 7.2.6.9 [icedtea-7]
2)	IcedTea JDK 7.2.6.9 [icedtea-bin-7]
*)	IcedTea JDK 3.3.0 [icedtea-bin-8]
4)	JamVM JDK 2.0.0 [jamvm]
Available Java Virtual Machines:
  [1]   icedtea-7 
  [2]   icedtea-bin-7 
  [3]   icedtea-bin-8  system-vm
  [4]   jamvm

Comment 1 Toralf Förster gentoo-dev

2017-04-29 09:35:42 UTC

Created attachment 471256 [details]
emerge-info.txt

Comment 2 Toralf Förster gentoo-dev

2017-04-29 09:35:45 UTC

Created attachment 471258 [details]
CMakeOutput.log

Comment 3 Toralf Förster gentoo-dev

2017-04-29 09:35:50 UTC

Created attachment 471260 [details]
emerge-history.txt

Comment 4 Toralf Förster gentoo-dev

2017-04-29 09:35:53 UTC

Created attachment 471262 [details]
environment

Comment 5 Toralf Förster gentoo-dev

2017-04-29 09:35:55 UTC

Created attachment 471264 [details]
etc.portage.tbz2

Comment 6 Toralf Förster gentoo-dev

2017-04-29 09:35:59 UTC

Created attachment 471266 [details]
sci-chemistry:avogadro2-0.9.0:20170429-092113.log

Comment 7 Toralf Förster gentoo-dev

2017-04-29 09:36:02 UTC

Created attachment 471268 [details]
temp.tbz2

Comment 8 milan hodoscek 2017-05-26 12:30:57 UTC

Created attachment 474360 [details, diff]
fixes a cmake file to compile with gcc-6 and gcc-7

This patch fixes the build of avogadrolibs, I think both 0.8.0 and 0.9.0 versions. However there is a problem with the cmake refereing for /usr/lib64/libjson.a and /usr/lib64/libjsoncpp.a

The/usr/lib64/libjson.a problem may be fixed by making a link to it from libjson-c.a

The /usr/lib64/libjsoncpp.a problem may be fixed by deleting the line -DBUILD_STATIC_LIBS=OFF in jsoncpp-1.8.0.build

Then also avogadro2 will build

Comment 9 milan hodoscek 2017-05-31 13:49:32 UTC

The text in comment #8 actually belongs to the bug (is copied from there) Bug #588706  (avogadrolibs bug) but fixes also the problem for the avogadro2 so I left it here.

Comment 10 Andreas Sturmlechner gentoo-dev

2018-03-04 12:33:28 UTC


*** This bug has been marked as a duplicate of bug 624242 ***