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Bug 610692 - sci-biology/express-1.5.1 : /.../targets.cpp:116:62: error: no matching function for call to ‘Target::cached_effective_length(const boost::shared_ptr<BiasBoss>&) const’
Summary: sci-biology/express-1.5.1 : /.../targets.cpp:116:62: error: no matching funct...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks: gcc-6
  Show dependency tree
 
Reported: 2017-02-23 12:47 UTC by Toralf Förster
Modified: 2017-07-30 09:12 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---

Attachments
emerge-info.txt (emerge-info.txt,6.09 KB, text/plain)
2017-02-23 12:47 UTC, Toralf Förster 		Details
emerge-history.txt (emerge-history.txt,314.81 KB, text/plain)
2017-02-23 12:47 UTC, Toralf Förster 		Details
environment (environment,117.56 KB, text/plain)
2017-02-23 12:47 UTC, Toralf Förster 		Details
etc.portage.tbz2 (etc.portage.tbz2,23.29 KB, application/x-bzip)
2017-02-23 12:47 UTC, Toralf Förster 		Details
sci-biology:express-1.5.1:20170223-123807.log (sci-biology:express-1.5.1:20170223-123807.log,14.82 KB, text/plain)
2017-02-23 12:47 UTC, Toralf Förster 		Details
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Description Toralf Förster gentoo-dev 2017-02-23 12:47:18 UTC 
cd /var/tmp/portage/sci-biology/express-1.5.1/work/express-1.5.1_build/src && /usr/bin/x86_64-pc-linux-gnu-g++   -I/usr/include/bamtools   -DNDEBUG -Werror=terminate -O2 -pipe -march=native   -o CMakeFiles/express.dir/targets.cpp.o -c /var/tmp/portage/sci-biology/express-1.5.1/work/express-1.5.1-src/src/targets.cpp
/var/tmp/portage/sci-biology/express-1.5.1/work/express-1.5.1-src/src/targets.cpp: In member function ‘double Target::sample_likelihood(bool, const std::vector<const Target*>*) const’:
/var/tmp/portage/sci-biology/express-1.5.1/work/express-1.5.1-src/src/targets.cpp:116:62: error: no matching function for call to ‘Target::cached_effective_length(const boost::shared_ptr<BiasBoss>&) const’
   double tot_eff_len = cached_effective_length(lib.bias_table);
                                                              ^
In file included from /var/tmp/portage/sci-biology/express-1.5.1/work/express-1.5.1-src/src/targets.cpp:10:0:

  -----------------------------------------------------------------

  This is an unstable amd64 chroot image (named desktop-libressl-abi32+64_20170215-185650) at a hardened host acting as a tinderbox.

  -----------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-6.3.0 *
llvm-config:
3.9.1
Available Python interpreters, in order of preference:
  [1]   python3.4
  [2]   python3.5 (fallback)
  [3]   python2.7 (fallback)
  [4]   jython2.7 (fallback)

java-config:
The following VMs are available for generation-2:
1)	IcedTea JDK 7.2.6.8 [icedtea-7]
2)	IcedTea JDK 7.2.6.8 [icedtea-bin-7]
*)	IcedTea JDK 3.3.0 [icedtea-bin-8]
Available Java Virtual Machines:
  [1]   icedtea-7 
  [2]   icedtea-bin-7 
  [3]   icedtea-bin-8  system-vm
Comment 1 Toralf Förster gentoo-dev 2017-02-23 12:47:22 UTC 
Created attachment 464862 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2017-02-23 12:47:27 UTC 
Created attachment 464864 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2017-02-23 12:47:31 UTC 
Created attachment 464866 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2017-02-23 12:47:34 UTC 
Created attachment 464868 [details]
etc.portage.tbz2
Comment 5 Toralf Förster gentoo-dev 2017-02-23 12:47:37 UTC 
Created attachment 464870 [details]
sci-biology:express-1.5.1:20170223-123807.log
Comment 6 Peter Levine 2017-07-23 01:37:42 UTC 
PR: https://github.com/gentoo/gentoo/pull/5179
Comment 7 David Seifert gentoo-dev 2017-07-30 09:12:29 UTC 
commit 61d3ecd7b439ebd0d08613df3dd92b272bb523de
Author: Peter Levine <plevine457@gmail.com>
Date:   Sat Jul 22 21:31:58 2017 -0400

    sci-biology/express: Fix building with GCC-6
    
    Bug: https://bugs.gentoo.org/show_bug.cgi?id=610692