Hi, I am installing on Gentoo::RAP an RStudio but my USE flags trigger requirement for sys-libs/pam and sys-auth/pambase. I doubt these are actually needed. The following mask changes are necessary to proceed: (see "package.unmask" in the portage(5) man page for more details) # required by virtual/pam-0-r1::gentoo # required by sci-mathematics/rstudio-1.0.136::gentoo[-dedicated,server] # required by sci-mathematics/rstudio (argument) # /apps/gentoo/usr/portage/profiles/features/prefix/package.mask: # Jeremy Olexa <darkside@gentoo.org> (30 Jun 2009) # The PAM auth system just will not work in Gentoo Prefix, instead the host auth # system should be used. =sys-libs/pam-1.3.0 # required by sys-libs/pam-1.3.0::gentoo # required by virtual/pam-0-r1::gentoo # required by sci-mathematics/rstudio-1.0.136::gentoo[-dedicated,server] # required by sci-mathematics/rstudio (argument) # /apps/gentoo/usr/portage/profiles/features/prefix/package.mask: # Jeremy Olexa <darkside@gentoo.org> (30 Jun 2009) # The PAM auth system just will not work in Gentoo Prefix, instead the host auth # system should be used. =sys-auth/pambase-20150213
Created attachment 462028 [details] emerge.log
$ emerge --info Portage 2.3.3 (python 2.7.12-final-0, prefix/linux-standalone/amd64, gcc-4.9.4, glibc-2.23-r3, 2.6.32-642.6.2.el6.Bull.104.x86_64 x86_64) ================================================================= System uname: Linux-2.6.32-642.6.2.el6.Bull.104.x86_64-x86_64-Intel-R-_Xeon-R-_CPU_E5-2670_0_@_2.60GHz-with-redhat-6.4-Santiago KiB Mem: 131942608 total, 53740960 free KiB Swap: 65536128 total, 65410744 free Timestamp of repository gentoo: Tue, 31 Jan 2017 14:00:01 +0000 sh bash 4.4_p11 ld GNU ld (Gentoo 2.27 p1.0) 2.27 app-shells/bash: 4.4_p11::gentoo dev-java/java-config: 2.2.0-r3::gentoo dev-lang/perl: 5.24.1_rc4::gentoo dev-lang/python: 2.7.12::gentoo, 3.4.5::gentoo dev-util/cmake: 3.7.2::gentoo dev-util/pkgconfig: 0.29.1::gentoo sys-apps/baselayout: 2.3::gentoo sys-apps/sandbox: 2.10-r3::gentoo sys-devel/autoconf: 2.69-r2::gentoo sys-devel/automake: 1.14.1-r1::gentoo, 1.15-r2::gentoo sys-devel/binutils: 2.27::gentoo sys-devel/gcc: 3.4.6-r2::gentoo, 4.1.2::gentoo, 4.2.4-r1::gentoo, 4.4.7::gentoo, 4.5.4::gentoo, 4.7.4::gentoo, 4.8.5::gentoo, 4.9.3::gentoo, 4.9.4::gentoo sys-devel/gcc-config: 1.8_p20160608::rap sys-devel/libtool: 2.4.6-r2::gentoo sys-devel/make: 4.2.1::gentoo sys-kernel/linux-headers: 4.9::gentoo (virtual/os-headers) sys-libs/glibc: 2.23-r3::gentoo Repositories: gentoo location: /apps/gentoo/usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 eclass-overrides: rap rap location: /apps/gentoo/usr/portage-stage sync-type: git sync-uri: https://anongit.gentoo.org/git/proj/android.git masters: gentoo eclass-overrides: rap haskell location: /apps/gentoo/var/lib/layman/haskell masters: gentoo priority: 50 eclass-overrides: rap science location: /apps/gentoo/var/lib/layman/science masters: gentoo priority: 50 eclass-overrides: rap ACCEPT_KEYWORDS="amd64 ~amd64 ~amd64-linux" ACCEPT_LICENSE="* -@EULA dlj-1.1 sun-bcla-java-vm Oracle-BCLA-JavaSE IBM-J1.6 skype-eula Nero-EULA-US AdobeFlash-10.3 skype-4.0.0.7-copyright AdobeFlash-11.x Intel-SDP OPERA-2014" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe -O2 -pipe -march=native" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O2 -pipe -O2 -pipe -march=native" DISTDIR="/apps/gentoo/usr/portage/distfiles" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles force-prefix merge-sync news nostrip parallel-fetch preserve-libs protect-owned sfperms splitdebug strict unknown-features-warn unmerge-logs unmerge-orphans unprivileged" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://distfiles.gentoo.org" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j8" PKGDIR="/apps/gentoo/usr/portage/packages" PORTAGE_CONFIGROOT="/apps/gentoo/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/apps/gentoo/var/tmp" USE="X alsa amd64 apache apache2 avx avx2 berkdb boost bzip2 cairo cgi cli coin cracklib crypt cryptlib cxx dbus device-mapper dhcp dri emboss encode fax fbcon ffmpeg fontconfig fortran gbm gd gdbm gimp glpk gnutls gtk hal hwdb iconv imaging innodb ithreads java javafx javascript jce jpeg jpg js jscript keymap ladspa lapack lcms libnotify lm_sensors mad mmx modules mpi mpich2 mysql ncurses nfs nls nptl nptlonly nscd objc openmp openssl pcre pdf perl php png policykit polkit ppds pppd prefix python qt3support readline resolvconf seccomp server session slideshow sndfile sqlite sse sse2 sse3 sse4_1 sse4_2 ssl ssse3 suexec svg syslog tcl tcpd threads tiff tk truetype unicode usb v4l v4l2 vim-syntax vnc wavpack wifi x11 xcb xml xorg xrandr xv xvid xvmc zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en_US en_GB en cs" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby21" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Thanks for the report, I'm closing this as invalid as pam is needed: argus /var/tmp/portage/sci-mathematics/rstudio-1.2.5033/work/rstudio-1.2.5033 # find . -name CMakeLists.txt -exec grep -H pam {} \; ./src/cpp/server/CMakeLists.txt:add_subdirectory(pam) ./src/cpp/server/CMakeLists.txt: # install pam profile ./src/cpp/server/CMakeLists.txt: set(RSERVER_PAM_DIR "extras/pam") ./src/cpp/server/CMakeLists.txt: # install pam profile ./src/cpp/server/CMakeLists.txt: set(RSERVER_PAM_DIR "extras/pam") ./src/cpp/server/pam/CMakeLists.txt:add_executable(rserver-pam ${PAM_SOURCE_FILES} ${PAM_HEADER_FILES}) ./src/cpp/server/pam/CMakeLists.txt: set_target_properties(rserver-pam PROPERTIES ./src/cpp/server/pam/CMakeLists.txt:target_link_libraries(rserver-pam ./src/cpp/server/pam/CMakeLists.txt:install(TARGETS rserver-pam DESTINATION ${RSTUDIO_INSTALL_BIN}) argus /var/tmp/portage/sci-mathematics/rstudio-1.2.5033/work/rstudio-1.2.5033 #
